Gene : Carub.0006s2562 C. rubella v1.1
Defline:  (1 of 1) K02635 - cytochrome b6 (petB) Genomic Order:  2562
Name:  ? Carub.0006s2562 Secondary Identifier:  ? PAC:39249311
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-101 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2562 0.5kb upstream 0.5kb upstream 1871 true scaffold_6: 9938300-9940170 Capsella rubella
Carub.0006s2562 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 9938300-9938799 Capsella rubella
Carub.0006s2562 0.5kb downstream 0.5kb downstream 1871 true scaffold_6: 9938800-9940670 Capsella rubella
Carub.0006s2562 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 9940171-9940670 Capsella rubella
Carub.0006s2562 1.0kb upstream 1.0kb upstream 2371 true scaffold_6: 9937800-9940170 Capsella rubella
Carub.0006s2562 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 9937800-9938799 Capsella rubella
Carub.0006s2562 1.0kb downstream 1.0kb downstream 2371 true scaffold_6: 9938800-9941170 Capsella rubella
Carub.0006s2562 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 9940171-9941170 Capsella rubella
Carub.0006s2562 2.0kb upstream 2.0kb upstream 3371 true scaffold_6: 9936800-9940170 Capsella rubella
Carub.0006s2562 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 9936800-9938799 Capsella rubella
Carub.0006s2562 2.0kb downstream 2.0kb downstream 3371 true scaffold_6: 9938800-9942170 Capsella rubella
Carub.0006s2562 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 9940171-9942170 Capsella rubella
Carub.0006s2562 5.0kb upstream 5.0kb upstream 6371 true scaffold_6: 9933800-9940170 Capsella rubella
Carub.0006s2562 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 9933800-9938799 Capsella rubella
Carub.0006s2562 5.0kb downstream 5.0kb downstream 6371 true scaffold_6: 9938800-9945170 Capsella rubella
Carub.0006s2562 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 9940171-9945170 Capsella rubella
Carub.0006s2562 10.0kb upstream 10.0kb upstream 11371 true scaffold_6: 9928800-9940170 Capsella rubella
Carub.0006s2562 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 9928800-9938799 Capsella rubella
Carub.0006s2562 10.0kb downstream 10.0kb downstream 11371 true scaffold_6: 9938800-9950170 Capsella rubella
Carub.0006s2562 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 9940171-9950170 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338523 5261 Brassicaceae View MSA
123841093 5264 Brassicales-Malvales View MSA
124322841 5266 SBM View MSA
124254317 5268 Malvidae View MSA
124051319 5270 Rosid View MSA
123751133 5271 Pentapetalae View MSA
122795753 5272 Eudicot View MSA
122050945 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350678 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain