Gene : Carub.0006s3534 C. rubella v1.1
Defline:  (1 of 2) PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  3534
Name:  ? Carub.0006s3534 Secondary Identifier:  ? PAC:39247914
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3534 0.5kb upstream 0.5kb upstream 2469 true scaffold_6: 15872085-15874553 Capsella rubella
Carub.0006s3534 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 15874054-15874553 Capsella rubella
Carub.0006s3534 0.5kb downstream 0.5kb downstream 2469 true scaffold_6: 15871585-15874053 Capsella rubella
Carub.0006s3534 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 15871585-15872084 Capsella rubella
Carub.0006s3534 1.0kb upstream 1.0kb upstream 2969 true scaffold_6: 15872085-15875053 Capsella rubella
Carub.0006s3534 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 15874054-15875053 Capsella rubella
Carub.0006s3534 1.0kb downstream 1.0kb downstream 2969 true scaffold_6: 15871085-15874053 Capsella rubella
Carub.0006s3534 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 15871085-15872084 Capsella rubella
Carub.0006s3534 2.0kb upstream 2.0kb upstream 3969 true scaffold_6: 15872085-15876053 Capsella rubella
Carub.0006s3534 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 15874054-15876053 Capsella rubella
Carub.0006s3534 2.0kb downstream 2.0kb downstream 3969 true scaffold_6: 15870085-15874053 Capsella rubella
Carub.0006s3534 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 15870085-15872084 Capsella rubella
Carub.0006s3534 5.0kb upstream 5.0kb upstream 6969 true scaffold_6: 15872085-15879053 Capsella rubella
Carub.0006s3534 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 15874054-15879053 Capsella rubella
Carub.0006s3534 5.0kb downstream 5.0kb downstream 6969 true scaffold_6: 15867085-15874053 Capsella rubella
Carub.0006s3534 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 15867085-15872084 Capsella rubella
Carub.0006s3534 10.0kb upstream 10.0kb upstream 11969 true scaffold_6: 15872085-15884053 Capsella rubella
Carub.0006s3534 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 15874054-15884053 Capsella rubella
Carub.0006s3534 10.0kb downstream 10.0kb downstream 11969 true scaffold_6: 15862085-15874053 Capsella rubella
Carub.0006s3534 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 15862085-15872084 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376062 5261 Brassicaceae View MSA
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain