Protein : Carub.0003s0579.1.p C. rubella v1.1
Secondary Identifier:  PAC:39239991 Organism Name:  Capsella rubella
Length:  606   Name:  Carub.0003s0579.1.p
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SummaryProteinsOther
 
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SummaryProteinsOther
 

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Proteins

6 Protein Domains

DB identifier Type Name
IPR013708 Domain Shikimate dehydrogenase substrate binding, N-terminal
IPR001381 Family 3-dehydroquinate dehydratase type I
IPR011342 Family Shikimate dehydrogenase
IPR013785 Domain Aldolase-type TIM barrel
IPR016040 Domain NAD(P)-binding domain
IPR006151 Domain Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
 

Other

1 CDSs

DB identifier Length Chromosome Location
Organism . Name
Carub.0003s0579.1_CDS 1821   scaffold_3: 1965212-1968279 Capsella rubella

33 Ontology Annotations

Ontology Term Db Gene/Protein Name
GO:0055114 GO Carub.0003s0579.1.p
GO:0050661 GO Carub.0003s0579.1.p
GO:0019632 GO Carub.0003s0579.1.p
GO:0004764 GO Carub.0003s0579.1.p
GO:0003855 GO Carub.0003s0579.1.p
GO:0003824 GO Carub.0003s0579.1.p
G3DSA:3.40.50.720 GENE3D Carub.0003s0579.1.p
G3DSA:3.40.192.10 GENE3D Carub.0003s0579.1.p
3-DEHYDROQUINATE-DEHYDRATASE-RXN MetaCyc Carub.0003s0579.1.p
K13832 KEGG Carub.0003s0579.1.p
IPR016040 InterPro Carub.0003s0579.1.p
IPR013785 InterPro Carub.0003s0579.1.p
IPR013708 InterPro Carub.0003s0579.1.p
IPR011342 InterPro Carub.0003s0579.1.p
IPR006151 InterPro Carub.0003s0579.1.p
IPR001381 InterPro Carub.0003s0579.1.p
PF01488 PFAM Carub.0003s0579.1.p
PF01487 PFAM Carub.0003s0579.1.p
PWY-6163 Pathway Carub.0003s0579.1.p
ARO-PWY Pathway Carub.0003s0579.1.p
PTHR21089:SF1 PANTHER Carub.0003s0579.1.p
PTHR21089 PANTHER Carub.0003s0579.1.p
SHIKIMATE-5-DEHYDROGENASE-RXN MetaCyc Carub.0003s0579.1.p
RXN-12131 MetaCyc Carub.0003s0579.1.p
TIGR01093 TIGRFAMs Carub.0003s0579.1.p
TIGR00507 TIGRFAMs Carub.0003s0579.1.p
SSF53223 SSF Carub.0003s0579.1.p
SSF51735 SSF Carub.0003s0579.1.p
SSF51569 SSF Carub.0003s0579.1.p
PF08501 PFAM Carub.0003s0579.1.p

4 Pathway Components

Type Key Level Step
      20
      13
      27
      17

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella ARO-PWY Capsella rubella pathologic  
Crubella PWY-6163 Capsella rubella pathologic