Gene : Carub.0003s1417 C. rubella v1.1
Defline:  (1 of 2) PTHR10543//PTHR10543:SF26 - BETA-CAROTENE DIOXYGENASE // 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  1417
Name:  ? Carub.0003s1417 Secondary Identifier:  ? PAC:39240149
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-695 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1417 0.5kb upstream 0.5kb upstream 2777 true scaffold_3: 4958331-4961107 Capsella rubella
Carub.0003s1417 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4960608-4961107 Capsella rubella
Carub.0003s1417 0.5kb downstream 0.5kb downstream 2777 true scaffold_3: 4957831-4960607 Capsella rubella
Carub.0003s1417 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4957831-4958330 Capsella rubella
Carub.0003s1417 1.0kb upstream 1.0kb upstream 3277 true scaffold_3: 4958331-4961607 Capsella rubella
Carub.0003s1417 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4960608-4961607 Capsella rubella
Carub.0003s1417 1.0kb downstream 1.0kb downstream 3277 true scaffold_3: 4957331-4960607 Capsella rubella
Carub.0003s1417 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4957331-4958330 Capsella rubella
Carub.0003s1417 2.0kb upstream 2.0kb upstream 4277 true scaffold_3: 4958331-4962607 Capsella rubella
Carub.0003s1417 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4960608-4962607 Capsella rubella
Carub.0003s1417 2.0kb downstream 2.0kb downstream 4277 true scaffold_3: 4956331-4960607 Capsella rubella
Carub.0003s1417 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4956331-4958330 Capsella rubella
Carub.0003s1417 5.0kb upstream 5.0kb upstream 7277 true scaffold_3: 4958331-4965607 Capsella rubella
Carub.0003s1417 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4960608-4965607 Capsella rubella
Carub.0003s1417 5.0kb downstream 5.0kb downstream 7277 true scaffold_3: 4953331-4960607 Capsella rubella
Carub.0003s1417 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4953331-4958330 Capsella rubella
Carub.0003s1417 10.0kb upstream 10.0kb upstream 12277 true scaffold_3: 4958331-4970607 Capsella rubella
Carub.0003s1417 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4960608-4970607 Capsella rubella
Carub.0003s1417 10.0kb downstream 10.0kb downstream 12277 true scaffold_3: 4948331-4960607 Capsella rubella
Carub.0003s1417 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4948331-4958330 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361119 5261 Brassicaceae View MSA
123839521 5264 Brassicales-Malvales View MSA
124350973 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain