Gene : Araha.10294s0012 A. halleri v1.1
Defline:  (1 of 4) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  12
Name:  ? Araha.10294s0012 Secondary Identifier:  ? PAC:28853763
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-2541 Arabidopsis halleri pathologic  
Ahalleri PWY-5670 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.10294s0012 0.5kb upstream 0.5kb upstream 4164 true Scaffold10294: 44378-48541 Arabidopsis halleri
Araha.10294s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold10294: 48042-48541 Arabidopsis halleri
Araha.10294s0012 0.5kb downstream 0.5kb downstream 4164 true Scaffold10294: 43878-48041 Arabidopsis halleri
Araha.10294s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold10294: 43878-44377 Arabidopsis halleri
Araha.10294s0012 1.0kb upstream 1.0kb upstream 4664 true Scaffold10294: 44378-49041 Arabidopsis halleri
Araha.10294s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold10294: 48042-49041 Arabidopsis halleri
Araha.10294s0012 1.0kb downstream 1.0kb downstream 4664 true Scaffold10294: 43378-48041 Arabidopsis halleri
Araha.10294s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold10294: 43378-44377 Arabidopsis halleri
Araha.10294s0012 2.0kb upstream 2.0kb upstream 5664 true Scaffold10294: 44378-50041 Arabidopsis halleri
Araha.10294s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold10294: 48042-50041 Arabidopsis halleri
Araha.10294s0012 2.0kb downstream 2.0kb downstream 5664 true Scaffold10294: 42378-48041 Arabidopsis halleri
Araha.10294s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold10294: 42378-44377 Arabidopsis halleri
Araha.10294s0012 5.0kb upstream 5.0kb upstream 8664 true Scaffold10294: 44378-53041 Arabidopsis halleri
Araha.10294s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold10294: 48042-53041 Arabidopsis halleri
Araha.10294s0012 5.0kb downstream 5.0kb downstream 8664 true Scaffold10294: 39378-48041 Arabidopsis halleri
Araha.10294s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold10294: 39378-44377 Arabidopsis halleri
Araha.10294s0012 10.0kb upstream 10.0kb upstream 13664 true Scaffold10294: 44378-58041 Arabidopsis halleri
Araha.10294s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold10294: 48042-58041 Arabidopsis halleri
Araha.10294s0012 10.0kb downstream 10.0kb downstream 13664 true Scaffold10294: 34378-48041 Arabidopsis halleri
Araha.10294s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold10294: 34378-44377 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363626 5261 Brassicaceae View MSA
123827932 5264 Brassicales-Malvales View MSA
124340465 5266 SBM View MSA
124243687 5268 Malvidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain