Gene : Araha.7562s0001 A. halleri v1.1
Defline:  (1 of 2) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  1
Name:  ? Araha.7562s0001 Secondary Identifier:  ? PAC:28840395
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-7511 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.7562s0001 0.5kb upstream 0.5kb upstream 2106 true Scaffold7562: 14507-16612 Arabidopsis halleri
Araha.7562s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold7562: 14507-15006 Arabidopsis halleri
Araha.7562s0001 0.5kb downstream 0.5kb downstream 2106 true Scaffold7562: 15007-17112 Arabidopsis halleri
Araha.7562s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold7562: 16613-17112 Arabidopsis halleri
Araha.7562s0001 1.0kb upstream 1.0kb upstream 2606 true Scaffold7562: 14007-16612 Arabidopsis halleri
Araha.7562s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold7562: 14007-15006 Arabidopsis halleri
Araha.7562s0001 1.0kb downstream 1.0kb downstream 2606 true Scaffold7562: 15007-17612 Arabidopsis halleri
Araha.7562s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold7562: 16613-17612 Arabidopsis halleri
Araha.7562s0001 2.0kb upstream 2.0kb upstream 3606 true Scaffold7562: 13007-16612 Arabidopsis halleri
Araha.7562s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold7562: 13007-15006 Arabidopsis halleri
Araha.7562s0001 2.0kb downstream 2.0kb downstream 3606 true Scaffold7562: 15007-18612 Arabidopsis halleri
Araha.7562s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold7562: 16613-18612 Arabidopsis halleri
Araha.7562s0001 5.0kb upstream 5.0kb upstream 6606 true Scaffold7562: 10007-16612 Arabidopsis halleri
Araha.7562s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold7562: 10007-15006 Arabidopsis halleri
Araha.7562s0001 5.0kb downstream 5.0kb downstream 6606 true Scaffold7562: 15007-21612 Arabidopsis halleri
Araha.7562s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold7562: 16613-21612 Arabidopsis halleri
Araha.7562s0001 10.0kb upstream 10.0kb upstream 11606 true Scaffold7562: 5007-16612 Arabidopsis halleri
Araha.7562s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold7562: 5007-15006 Arabidopsis halleri
Araha.7562s0001 10.0kb downstream 10.0kb downstream 11606 true Scaffold7562: 15007-26612 Arabidopsis halleri
Araha.7562s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold7562: 16613-26612 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370445 5261 Brassicaceae View MSA
123837010 5264 Brassicales-Malvales View MSA
124350441 5266 SBM View MSA
124240092 5268 Malvidae View MSA
124068371 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain