Gene : Araha.48675s0007 A. halleri v1.1

Defline:  (1 of 2) PTHR10796 - PATCHED-RELATED Genomic Order:  7
Name:  ? Araha.48675s0007 Secondary Identifier:  ? PAC:28857877

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.48675s0007 0.5kb upstream 0.5kb upstream 9142 true Scaffold48675: 15075-24216 Arabidopsis halleri
Araha.48675s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold48675: 15075-15574 Arabidopsis halleri
Araha.48675s0007 0.5kb downstream 0.5kb downstream 9142 true Scaffold48675: 15575-24716 Arabidopsis halleri
Araha.48675s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold48675: 24217-24716 Arabidopsis halleri
Araha.48675s0007 1.0kb upstream 1.0kb upstream 9642 true Scaffold48675: 14575-24216 Arabidopsis halleri
Araha.48675s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold48675: 14575-15574 Arabidopsis halleri
Araha.48675s0007 1.0kb downstream 1.0kb downstream 9642 true Scaffold48675: 15575-25216 Arabidopsis halleri
Araha.48675s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold48675: 24217-25216 Arabidopsis halleri
Araha.48675s0007 2.0kb upstream 2.0kb upstream 10642 true Scaffold48675: 13575-24216 Arabidopsis halleri
Araha.48675s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold48675: 13575-15574 Arabidopsis halleri
Araha.48675s0007 2.0kb downstream 2.0kb downstream 10642 true Scaffold48675: 15575-26216 Arabidopsis halleri
Araha.48675s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold48675: 24217-26216 Arabidopsis halleri
Araha.48675s0007 5.0kb upstream 5.0kb upstream 13642 true Scaffold48675: 10575-24216 Arabidopsis halleri
Araha.48675s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold48675: 10575-15574 Arabidopsis halleri
Araha.48675s0007 5.0kb downstream 5.0kb downstream 13642 true Scaffold48675: 15575-29216 Arabidopsis halleri
Araha.48675s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold48675: 24217-29216 Arabidopsis halleri
Araha.48675s0007 10.0kb upstream 10.0kb upstream 18642 true Scaffold48675: 5575-24216 Arabidopsis halleri
Araha.48675s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold48675: 5575-15574 Arabidopsis halleri
Araha.48675s0007 10.0kb downstream 10.0kb downstream 18642 true Scaffold48675: 15575-34216 Arabidopsis halleri
Araha.48675s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold48675: 24217-34216 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377308 5261 Brassicaceae View MSA
123834018 5264 Brassicales-Malvales View MSA
124346774 5266 SBM View MSA
124251658 5268 Malvidae View MSA
124071580 5270 Rosid View MSA
123738357 5271 Pentapetalae View MSA
122785760 5272 Eudicot View MSA
122045765 5273 Angiosperm View MSA
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain