Gene : Cagra.0296s0001 C. grandiflora v1.1
Defline:  (1 of 4) KOG0987 - DNA helicase PIF1/RRM3 Genomic Order:  1
Name:  ? Cagra.0296s0001 Secondary Identifier:  ? PAC:28898093
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0296s0001 0.5kb upstream 0.5kb upstream 5101 true Scaffold296: 4099-9199 Capsella grandiflora
Cagra.0296s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold296: 8700-9199 Capsella grandiflora
Cagra.0296s0001 0.5kb downstream 0.5kb downstream 5101 true Scaffold296: 3599-8699 Capsella grandiflora
Cagra.0296s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold296: 3599-4098 Capsella grandiflora
Cagra.0296s0001 1.0kb upstream 1.0kb upstream 5601 true Scaffold296: 4099-9699 Capsella grandiflora
Cagra.0296s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold296: 8700-9699 Capsella grandiflora
Cagra.0296s0001 1.0kb downstream 1.0kb downstream 5601 true Scaffold296: 3099-8699 Capsella grandiflora
Cagra.0296s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold296: 3099-4098 Capsella grandiflora
Cagra.0296s0001 2.0kb upstream 2.0kb upstream 6601 true Scaffold296: 4099-10699 Capsella grandiflora
Cagra.0296s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold296: 8700-10699 Capsella grandiflora
Cagra.0296s0001 2.0kb downstream 2.0kb downstream 6601 true Scaffold296: 2099-8699 Capsella grandiflora
Cagra.0296s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold296: 2099-4098 Capsella grandiflora
Cagra.0296s0001 5.0kb upstream 5.0kb upstream 9601 true Scaffold296: 4099-13699 Capsella grandiflora
Cagra.0296s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold296: 8700-13699 Capsella grandiflora
Cagra.0296s0001 5.0kb downstream 5.0kb downstream 8699 true Scaffold296: 1-8699 Capsella grandiflora
Cagra.0296s0001 5.0kb downstream 5.0kb downstream 4098 false Scaffold296: 1-4098 Capsella grandiflora
Cagra.0296s0001 10.0kb upstream 10.0kb upstream 10106 true Scaffold296: 4099-14204 Capsella grandiflora
Cagra.0296s0001 10.0kb upstream 10.0kb upstream 5505 false Scaffold296: 8700-14204 Capsella grandiflora
Cagra.0296s0001 10.0kb downstream 10.0kb downstream 8699 true Scaffold296: 1-8699 Capsella grandiflora
Cagra.0296s0001 10.0kb downstream 10.0kb downstream 4098 false Scaffold296: 1-4098 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029830 5273 Angiosperm View MSA
122333442 5261 Brassicaceae Singleton cluster - no MSA
123774386 5264 Brassicales-Malvales Singleton cluster - no MSA
124350527 5266 SBM View MSA
124252774 5268 Malvidae View MSA
124051325 5270 Rosid View MSA
123752824 5271 Pentapetalae View MSA
122797633 5272 Eudicot View MSA
121351580 5274 Embryophyte View MSA
123426292 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain