Gene : Cagra.0566s0019 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31375:SF17 - EXOPOLYGALACTURONASE CLONE GBGE184 Genomic Order:  19
Name:  ? Cagra.0566s0019 Secondary Identifier:  ? PAC:28918636
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0566s0019 0.5kb upstream 0.5kb upstream 2052 true Scaffold566: 55688-57739 Capsella grandiflora
Cagra.0566s0019 0.5kb upstream 0.5kb upstream 500 false Scaffold566: 57240-57739 Capsella grandiflora
Cagra.0566s0019 0.5kb downstream 0.5kb downstream 2052 true Scaffold566: 55188-57239 Capsella grandiflora
Cagra.0566s0019 0.5kb downstream 0.5kb downstream 500 false Scaffold566: 55188-55687 Capsella grandiflora
Cagra.0566s0019 1.0kb upstream 1.0kb upstream 2552 true Scaffold566: 55688-58239 Capsella grandiflora
Cagra.0566s0019 1.0kb upstream 1.0kb upstream 1000 false Scaffold566: 57240-58239 Capsella grandiflora
Cagra.0566s0019 1.0kb downstream 1.0kb downstream 2552 true Scaffold566: 54688-57239 Capsella grandiflora
Cagra.0566s0019 1.0kb downstream 1.0kb downstream 1000 false Scaffold566: 54688-55687 Capsella grandiflora
Cagra.0566s0019 2.0kb upstream 2.0kb upstream 3552 true Scaffold566: 55688-59239 Capsella grandiflora
Cagra.0566s0019 2.0kb upstream 2.0kb upstream 2000 false Scaffold566: 57240-59239 Capsella grandiflora
Cagra.0566s0019 2.0kb downstream 2.0kb downstream 3552 true Scaffold566: 53688-57239 Capsella grandiflora
Cagra.0566s0019 2.0kb downstream 2.0kb downstream 2000 false Scaffold566: 53688-55687 Capsella grandiflora
Cagra.0566s0019 5.0kb upstream 5.0kb upstream 6552 true Scaffold566: 55688-62239 Capsella grandiflora
Cagra.0566s0019 5.0kb upstream 5.0kb upstream 5000 false Scaffold566: 57240-62239 Capsella grandiflora
Cagra.0566s0019 5.0kb downstream 5.0kb downstream 6552 true Scaffold566: 50688-57239 Capsella grandiflora
Cagra.0566s0019 5.0kb downstream 5.0kb downstream 5000 false Scaffold566: 50688-55687 Capsella grandiflora
Cagra.0566s0019 10.0kb upstream 10.0kb upstream 11446 true Scaffold566: 55688-67133 Capsella grandiflora
Cagra.0566s0019 10.0kb upstream 10.0kb upstream 9894 false Scaffold566: 57240-67133 Capsella grandiflora
Cagra.0566s0019 10.0kb downstream 10.0kb downstream 11552 true Scaffold566: 45688-57239 Capsella grandiflora
Cagra.0566s0019 10.0kb downstream 10.0kb downstream 10000 false Scaffold566: 45688-55687 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369949 5261 Brassicaceae View MSA
123837195 5264 Brassicales-Malvales View MSA
124351159 5266 SBM View MSA
124251239 5268 Malvidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain