Gene : Cagra.0622s0018 C. grandiflora v1.1
Defline:  (1 of 1) PTHR16166//PTHR16166:SF100 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 Genomic Order:  18
Name:  ? Cagra.0622s0018 Secondary Identifier:  ? PAC:28895739
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0622s0018 0.5kb upstream 0.5kb upstream 20418 true Scaffold622: 82177-102594 Capsella grandiflora
Cagra.0622s0018 0.5kb upstream 0.5kb upstream 500 false Scaffold622: 82177-82676 Capsella grandiflora
Cagra.0622s0018 0.5kb downstream 0.5kb downstream 20418 true Scaffold622: 82677-103094 Capsella grandiflora
Cagra.0622s0018 0.5kb downstream 0.5kb downstream 500 false Scaffold622: 102595-103094 Capsella grandiflora
Cagra.0622s0018 1.0kb upstream 1.0kb upstream 20918 true Scaffold622: 81677-102594 Capsella grandiflora
Cagra.0622s0018 1.0kb upstream 1.0kb upstream 1000 false Scaffold622: 81677-82676 Capsella grandiflora
Cagra.0622s0018 1.0kb downstream 1.0kb downstream 20918 true Scaffold622: 82677-103594 Capsella grandiflora
Cagra.0622s0018 1.0kb downstream 1.0kb downstream 1000 false Scaffold622: 102595-103594 Capsella grandiflora
Cagra.0622s0018 2.0kb upstream 2.0kb upstream 21918 true Scaffold622: 80677-102594 Capsella grandiflora
Cagra.0622s0018 2.0kb upstream 2.0kb upstream 2000 false Scaffold622: 80677-82676 Capsella grandiflora
Cagra.0622s0018 2.0kb downstream 2.0kb downstream 20924 true Scaffold622: 82677-103600 Capsella grandiflora
Cagra.0622s0018 2.0kb downstream 2.0kb downstream 1006 false Scaffold622: 102595-103600 Capsella grandiflora
Cagra.0622s0018 5.0kb upstream 5.0kb upstream 24918 true Scaffold622: 77677-102594 Capsella grandiflora
Cagra.0622s0018 5.0kb upstream 5.0kb upstream 5000 false Scaffold622: 77677-82676 Capsella grandiflora
Cagra.0622s0018 5.0kb downstream 5.0kb downstream 20924 true Scaffold622: 82677-103600 Capsella grandiflora
Cagra.0622s0018 5.0kb downstream 5.0kb downstream 1006 false Scaffold622: 102595-103600 Capsella grandiflora
Cagra.0622s0018 10.0kb upstream 10.0kb upstream 29918 true Scaffold622: 72677-102594 Capsella grandiflora
Cagra.0622s0018 10.0kb upstream 10.0kb upstream 10000 false Scaffold622: 72677-82676 Capsella grandiflora
Cagra.0622s0018 10.0kb downstream 10.0kb downstream 20924 true Scaffold622: 82677-103600 Capsella grandiflora
Cagra.0622s0018 10.0kb downstream 10.0kb downstream 1006 false Scaffold622: 102595-103600 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360513 5261 Brassicaceae View MSA
123827993 5264 Brassicales-Malvales View MSA
124339674 5266 SBM View MSA
124239824 5268 Malvidae View MSA
124066672 5270 Rosid View MSA
123741349 5271 Pentapetalae View MSA
122793853 5272 Eudicot View MSA
122042276 5273 Angiosperm View MSA
121346115 5274 Embryophyte View MSA
123424266 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain