Gene : Cagra.0787s0009 C. grandiflora v1.1
Defline:  (1 of 1) PF12452 - Protein of unknown function (DUF3685) (DUF3685) Genomic Order:  9
Name:  ? Cagra.0787s0009 Secondary Identifier:  ? PAC:28895302
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0787s0009 0.5kb upstream 0.5kb upstream 3677 true Scaffold787: 52067-55743 Capsella grandiflora
Cagra.0787s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold787: 52067-52566 Capsella grandiflora
Cagra.0787s0009 0.5kb downstream 0.5kb downstream 3677 true Scaffold787: 52567-56243 Capsella grandiflora
Cagra.0787s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold787: 55744-56243 Capsella grandiflora
Cagra.0787s0009 1.0kb upstream 1.0kb upstream 4177 true Scaffold787: 51567-55743 Capsella grandiflora
Cagra.0787s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold787: 51567-52566 Capsella grandiflora
Cagra.0787s0009 1.0kb downstream 1.0kb downstream 4177 true Scaffold787: 52567-56743 Capsella grandiflora
Cagra.0787s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold787: 55744-56743 Capsella grandiflora
Cagra.0787s0009 2.0kb upstream 2.0kb upstream 5177 true Scaffold787: 50567-55743 Capsella grandiflora
Cagra.0787s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold787: 50567-52566 Capsella grandiflora
Cagra.0787s0009 2.0kb downstream 2.0kb downstream 5177 true Scaffold787: 52567-57743 Capsella grandiflora
Cagra.0787s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold787: 55744-57743 Capsella grandiflora
Cagra.0787s0009 5.0kb upstream 5.0kb upstream 8177 true Scaffold787: 47567-55743 Capsella grandiflora
Cagra.0787s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold787: 47567-52566 Capsella grandiflora
Cagra.0787s0009 5.0kb downstream 5.0kb downstream 8177 true Scaffold787: 52567-60743 Capsella grandiflora
Cagra.0787s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold787: 55744-60743 Capsella grandiflora
Cagra.0787s0009 10.0kb upstream 10.0kb upstream 13177 true Scaffold787: 42567-55743 Capsella grandiflora
Cagra.0787s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold787: 42567-52566 Capsella grandiflora
Cagra.0787s0009 10.0kb downstream 10.0kb downstream 13177 true Scaffold787: 52567-65743 Capsella grandiflora
Cagra.0787s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold787: 55744-65743 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334309 5261 Brassicaceae Singleton cluster - no MSA
123837592 5264 Brassicales-Malvales View MSA
124337220 5266 SBM View MSA
124242986 5268 Malvidae View MSA
124065521 5270 Rosid View MSA
123739114 5271 Pentapetalae View MSA
122786546 5272 Eudicot View MSA
122046788 5273 Angiosperm View MSA
121346077 5274 Embryophyte View MSA
123380322 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain