Gene : Cagra.0716s0054 C. grandiflora v1.1
Defline:  (1 of 6) PTHR11614:SF92 - ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN-RELATED Genomic Order:  54
Name:  ? Cagra.0716s0054 Secondary Identifier:  ? PAC:28895694
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7420 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0716s0054 0.5kb upstream 0.5kb upstream 2595 true Scaffold716: 237137-239731 Capsella grandiflora
Cagra.0716s0054 0.5kb upstream 0.5kb upstream 500 false Scaffold716: 237137-237636 Capsella grandiflora
Cagra.0716s0054 0.5kb downstream 0.5kb downstream 2595 true Scaffold716: 237637-240231 Capsella grandiflora
Cagra.0716s0054 0.5kb downstream 0.5kb downstream 500 false Scaffold716: 239732-240231 Capsella grandiflora
Cagra.0716s0054 1.0kb upstream 1.0kb upstream 3095 true Scaffold716: 236637-239731 Capsella grandiflora
Cagra.0716s0054 1.0kb upstream 1.0kb upstream 1000 false Scaffold716: 236637-237636 Capsella grandiflora
Cagra.0716s0054 1.0kb downstream 1.0kb downstream 3095 true Scaffold716: 237637-240731 Capsella grandiflora
Cagra.0716s0054 1.0kb downstream 1.0kb downstream 1000 false Scaffold716: 239732-240731 Capsella grandiflora
Cagra.0716s0054 2.0kb upstream 2.0kb upstream 4095 true Scaffold716: 235637-239731 Capsella grandiflora
Cagra.0716s0054 2.0kb upstream 2.0kb upstream 2000 false Scaffold716: 235637-237636 Capsella grandiflora
Cagra.0716s0054 2.0kb downstream 2.0kb downstream 4095 true Scaffold716: 237637-241731 Capsella grandiflora
Cagra.0716s0054 2.0kb downstream 2.0kb downstream 2000 false Scaffold716: 239732-241731 Capsella grandiflora
Cagra.0716s0054 5.0kb upstream 5.0kb upstream 7095 true Scaffold716: 232637-239731 Capsella grandiflora
Cagra.0716s0054 5.0kb upstream 5.0kb upstream 5000 false Scaffold716: 232637-237636 Capsella grandiflora
Cagra.0716s0054 5.0kb downstream 5.0kb downstream 7095 true Scaffold716: 237637-244731 Capsella grandiflora
Cagra.0716s0054 5.0kb downstream 5.0kb downstream 5000 false Scaffold716: 239732-244731 Capsella grandiflora
Cagra.0716s0054 10.0kb upstream 10.0kb upstream 12095 true Scaffold716: 227637-239731 Capsella grandiflora
Cagra.0716s0054 10.0kb upstream 10.0kb upstream 10000 false Scaffold716: 227637-237636 Capsella grandiflora
Cagra.0716s0054 10.0kb downstream 10.0kb downstream 12095 true Scaffold716: 237637-249731 Capsella grandiflora
Cagra.0716s0054 10.0kb downstream 10.0kb downstream 10000 false Scaffold716: 239732-249731 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361271 5261 Brassicaceae View MSA
123798127 5264 Brassicales-Malvales View MSA
124295803 5266 SBM View MSA
124148142 5268 Malvidae View MSA
123874198 5270 Rosid View MSA
123458206 5271 Pentapetalae View MSA
122796454 5272 Eudicot View MSA
122051494 5273 Angiosperm View MSA
121350082 5274 Embryophyte View MSA
123428617 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain