Gene : Cagra.1317s0029 C. grandiflora v1.1
Defline:  (1 of 222) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  29
Name:  ? Cagra.1317s0029 Secondary Identifier:  ? PAC:28910438
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1317s0029 0.5kb upstream 0.5kb upstream 1312 true Scaffold1317: 107270-108581 Capsella grandiflora
Cagra.1317s0029 0.5kb upstream 0.5kb upstream 500 false Scaffold1317: 108082-108581 Capsella grandiflora
Cagra.1317s0029 0.5kb downstream 0.5kb downstream 1312 true Scaffold1317: 106770-108081 Capsella grandiflora
Cagra.1317s0029 0.5kb downstream 0.5kb downstream 500 false Scaffold1317: 106770-107269 Capsella grandiflora
Cagra.1317s0029 1.0kb upstream 1.0kb upstream 1812 true Scaffold1317: 107270-109081 Capsella grandiflora
Cagra.1317s0029 1.0kb upstream 1.0kb upstream 1000 false Scaffold1317: 108082-109081 Capsella grandiflora
Cagra.1317s0029 1.0kb downstream 1.0kb downstream 1812 true Scaffold1317: 106270-108081 Capsella grandiflora
Cagra.1317s0029 1.0kb downstream 1.0kb downstream 1000 false Scaffold1317: 106270-107269 Capsella grandiflora
Cagra.1317s0029 2.0kb upstream 2.0kb upstream 2812 true Scaffold1317: 107270-110081 Capsella grandiflora
Cagra.1317s0029 2.0kb upstream 2.0kb upstream 2000 false Scaffold1317: 108082-110081 Capsella grandiflora
Cagra.1317s0029 2.0kb downstream 2.0kb downstream 2812 true Scaffold1317: 105270-108081 Capsella grandiflora
Cagra.1317s0029 2.0kb downstream 2.0kb downstream 2000 false Scaffold1317: 105270-107269 Capsella grandiflora
Cagra.1317s0029 5.0kb upstream 5.0kb upstream 5812 true Scaffold1317: 107270-113081 Capsella grandiflora
Cagra.1317s0029 5.0kb upstream 5.0kb upstream 5000 false Scaffold1317: 108082-113081 Capsella grandiflora
Cagra.1317s0029 5.0kb downstream 5.0kb downstream 5812 true Scaffold1317: 102270-108081 Capsella grandiflora
Cagra.1317s0029 5.0kb downstream 5.0kb downstream 5000 false Scaffold1317: 102270-107269 Capsella grandiflora
Cagra.1317s0029 10.0kb upstream 10.0kb upstream 10812 true Scaffold1317: 107270-118081 Capsella grandiflora
Cagra.1317s0029 10.0kb upstream 10.0kb upstream 10000 false Scaffold1317: 108082-118081 Capsella grandiflora
Cagra.1317s0029 10.0kb downstream 10.0kb downstream 10812 true Scaffold1317: 97270-108081 Capsella grandiflora
Cagra.1317s0029 10.0kb downstream 10.0kb downstream 10000 false Scaffold1317: 97270-107269 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368268 5261 Brassicaceae View MSA
123835519 5264 Brassicales-Malvales View MSA
124349980 5266 SBM View MSA
124252985 5268 Malvidae View MSA
124061661 5270 Rosid View MSA
123747843 5271 Pentapetalae View MSA
122790614 5272 Eudicot View MSA
122044868 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain