Gene : Cagra.1301s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR30544//PTHR30544:SF3 - 23S RRNA METHYLTRANSFERASE Genomic Order:  4
Name:  ? Cagra.1301s0004 Secondary Identifier:  ? PAC:28917634
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1301s0004 0.5kb upstream 0.5kb upstream 2915 true Scaffold1301: 16127-19041 Capsella grandiflora
Cagra.1301s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold1301: 18542-19041 Capsella grandiflora
Cagra.1301s0004 0.5kb downstream 0.5kb downstream 2915 true Scaffold1301: 15627-18541 Capsella grandiflora
Cagra.1301s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold1301: 15627-16126 Capsella grandiflora
Cagra.1301s0004 1.0kb upstream 1.0kb upstream 3415 true Scaffold1301: 16127-19541 Capsella grandiflora
Cagra.1301s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold1301: 18542-19541 Capsella grandiflora
Cagra.1301s0004 1.0kb downstream 1.0kb downstream 3415 true Scaffold1301: 15127-18541 Capsella grandiflora
Cagra.1301s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold1301: 15127-16126 Capsella grandiflora
Cagra.1301s0004 2.0kb upstream 2.0kb upstream 4415 true Scaffold1301: 16127-20541 Capsella grandiflora
Cagra.1301s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold1301: 18542-20541 Capsella grandiflora
Cagra.1301s0004 2.0kb downstream 2.0kb downstream 4415 true Scaffold1301: 14127-18541 Capsella grandiflora
Cagra.1301s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold1301: 14127-16126 Capsella grandiflora
Cagra.1301s0004 5.0kb upstream 5.0kb upstream 7415 true Scaffold1301: 16127-23541 Capsella grandiflora
Cagra.1301s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold1301: 18542-23541 Capsella grandiflora
Cagra.1301s0004 5.0kb downstream 5.0kb downstream 7415 true Scaffold1301: 11127-18541 Capsella grandiflora
Cagra.1301s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold1301: 11127-16126 Capsella grandiflora
Cagra.1301s0004 10.0kb upstream 10.0kb upstream 12415 true Scaffold1301: 16127-28541 Capsella grandiflora
Cagra.1301s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold1301: 18542-28541 Capsella grandiflora
Cagra.1301s0004 10.0kb downstream 10.0kb downstream 12415 true Scaffold1301: 6127-18541 Capsella grandiflora
Cagra.1301s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold1301: 6127-16126 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368512 5261 Brassicaceae View MSA
123834635 5264 Brassicales-Malvales View MSA
124340315 5266 SBM View MSA
124241965 5268 Malvidae View MSA
124065414 5270 Rosid View MSA
123740690 5271 Pentapetalae View MSA
122787851 5272 Eudicot View MSA
122043195 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346291 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain