Gene : Cagra.1225s0070 C. grandiflora v1.1
Defline:  (1 of 5) PTHR12313:SF14 - E3 UBIQUITIN-PROTEIN LIGASE RMA1-RELATED Genomic Order:  70
Name:  ? Cagra.1225s0070 Secondary Identifier:  ? PAC:28904168
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1225s0070 0.5kb upstream 0.5kb upstream 2160 true Scaffold1225: 251543-253702 Capsella grandiflora
Cagra.1225s0070 0.5kb upstream 0.5kb upstream 500 false Scaffold1225: 251543-252042 Capsella grandiflora
Cagra.1225s0070 0.5kb downstream 0.5kb downstream 2160 true Scaffold1225: 252043-254202 Capsella grandiflora
Cagra.1225s0070 0.5kb downstream 0.5kb downstream 500 false Scaffold1225: 253703-254202 Capsella grandiflora
Cagra.1225s0070 1.0kb upstream 1.0kb upstream 2660 true Scaffold1225: 251043-253702 Capsella grandiflora
Cagra.1225s0070 1.0kb upstream 1.0kb upstream 1000 false Scaffold1225: 251043-252042 Capsella grandiflora
Cagra.1225s0070 1.0kb downstream 1.0kb downstream 2660 true Scaffold1225: 252043-254702 Capsella grandiflora
Cagra.1225s0070 1.0kb downstream 1.0kb downstream 1000 false Scaffold1225: 253703-254702 Capsella grandiflora
Cagra.1225s0070 2.0kb upstream 2.0kb upstream 3660 true Scaffold1225: 250043-253702 Capsella grandiflora
Cagra.1225s0070 2.0kb upstream 2.0kb upstream 2000 false Scaffold1225: 250043-252042 Capsella grandiflora
Cagra.1225s0070 2.0kb downstream 2.0kb downstream 3660 true Scaffold1225: 252043-255702 Capsella grandiflora
Cagra.1225s0070 2.0kb downstream 2.0kb downstream 2000 false Scaffold1225: 253703-255702 Capsella grandiflora
Cagra.1225s0070 5.0kb upstream 5.0kb upstream 6660 true Scaffold1225: 247043-253702 Capsella grandiflora
Cagra.1225s0070 5.0kb upstream 5.0kb upstream 5000 false Scaffold1225: 247043-252042 Capsella grandiflora
Cagra.1225s0070 5.0kb downstream 5.0kb downstream 6660 true Scaffold1225: 252043-258702 Capsella grandiflora
Cagra.1225s0070 5.0kb downstream 5.0kb downstream 5000 false Scaffold1225: 253703-258702 Capsella grandiflora
Cagra.1225s0070 10.0kb upstream 10.0kb upstream 11660 true Scaffold1225: 242043-253702 Capsella grandiflora
Cagra.1225s0070 10.0kb upstream 10.0kb upstream 10000 false Scaffold1225: 242043-252042 Capsella grandiflora
Cagra.1225s0070 10.0kb downstream 10.0kb downstream 11660 true Scaffold1225: 252043-263702 Capsella grandiflora
Cagra.1225s0070 10.0kb downstream 10.0kb downstream 10000 false Scaffold1225: 253703-263702 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362579 5261 Brassicaceae View MSA
123798387 5264 Brassicales-Malvales View MSA
124296028 5266 SBM View MSA
124250976 5268 Malvidae View MSA
123952553 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain