Gene : Cagra.1390s0012 C. grandiflora v1.1
Defline:  (1 of 3) PTHR24012:SF386 - PHRAGMOPLASTIN INTERACTING PROTEIN 1 Genomic Order:  12
Name:  ? Cagra.1390s0012 Secondary Identifier:  ? PAC:28907327
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1390s0012 0.5kb upstream 0.5kb upstream 3648 true Scaffold1390: 38366-42013 Capsella grandiflora
Cagra.1390s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold1390: 38366-38865 Capsella grandiflora
Cagra.1390s0012 0.5kb downstream 0.5kb downstream 3648 true Scaffold1390: 38866-42513 Capsella grandiflora
Cagra.1390s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold1390: 42014-42513 Capsella grandiflora
Cagra.1390s0012 1.0kb upstream 1.0kb upstream 4148 true Scaffold1390: 37866-42013 Capsella grandiflora
Cagra.1390s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold1390: 37866-38865 Capsella grandiflora
Cagra.1390s0012 1.0kb downstream 1.0kb downstream 4148 true Scaffold1390: 38866-43013 Capsella grandiflora
Cagra.1390s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold1390: 42014-43013 Capsella grandiflora
Cagra.1390s0012 2.0kb upstream 2.0kb upstream 5148 true Scaffold1390: 36866-42013 Capsella grandiflora
Cagra.1390s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold1390: 36866-38865 Capsella grandiflora
Cagra.1390s0012 2.0kb downstream 2.0kb downstream 5148 true Scaffold1390: 38866-44013 Capsella grandiflora
Cagra.1390s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold1390: 42014-44013 Capsella grandiflora
Cagra.1390s0012 5.0kb upstream 5.0kb upstream 8148 true Scaffold1390: 33866-42013 Capsella grandiflora
Cagra.1390s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold1390: 33866-38865 Capsella grandiflora
Cagra.1390s0012 5.0kb downstream 5.0kb downstream 8148 true Scaffold1390: 38866-47013 Capsella grandiflora
Cagra.1390s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold1390: 42014-47013 Capsella grandiflora
Cagra.1390s0012 10.0kb upstream 10.0kb upstream 13148 true Scaffold1390: 28866-42013 Capsella grandiflora
Cagra.1390s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold1390: 28866-38865 Capsella grandiflora
Cagra.1390s0012 10.0kb downstream 10.0kb downstream 13148 true Scaffold1390: 38866-52013 Capsella grandiflora
Cagra.1390s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold1390: 42014-52013 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368437 5261 Brassicaceae View MSA
123838209 5264 Brassicales-Malvales View MSA
124337867 5266 SBM View MSA
124241415 5268 Malvidae View MSA
124060480 5270 Rosid View MSA
123737702 5271 Pentapetalae View MSA
122796328 5272 Eudicot View MSA
122049388 5273 Angiosperm View MSA
121345095 5274 Embryophyte View MSA
123424707 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain