Gene : Cagra.1822s0015 C. grandiflora v1.1
Defline:  (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) Genomic Order:  15
Name:  ? Cagra.1822s0015 Secondary Identifier:  ? PAC:28905140
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1822s0015 0.5kb upstream 0.5kb upstream 8942 true Scaffold1822: 55203-64144 Capsella grandiflora
Cagra.1822s0015 0.5kb upstream 0.5kb upstream 500 false Scaffold1822: 63645-64144 Capsella grandiflora
Cagra.1822s0015 0.5kb downstream 0.5kb downstream 8942 true Scaffold1822: 54703-63644 Capsella grandiflora
Cagra.1822s0015 0.5kb downstream 0.5kb downstream 500 false Scaffold1822: 54703-55202 Capsella grandiflora
Cagra.1822s0015 1.0kb upstream 1.0kb upstream 9442 true Scaffold1822: 55203-64644 Capsella grandiflora
Cagra.1822s0015 1.0kb upstream 1.0kb upstream 1000 false Scaffold1822: 63645-64644 Capsella grandiflora
Cagra.1822s0015 1.0kb downstream 1.0kb downstream 9442 true Scaffold1822: 54203-63644 Capsella grandiflora
Cagra.1822s0015 1.0kb downstream 1.0kb downstream 1000 false Scaffold1822: 54203-55202 Capsella grandiflora
Cagra.1822s0015 2.0kb upstream 2.0kb upstream 10442 true Scaffold1822: 55203-65644 Capsella grandiflora
Cagra.1822s0015 2.0kb upstream 2.0kb upstream 2000 false Scaffold1822: 63645-65644 Capsella grandiflora
Cagra.1822s0015 2.0kb downstream 2.0kb downstream 10442 true Scaffold1822: 53203-63644 Capsella grandiflora
Cagra.1822s0015 2.0kb downstream 2.0kb downstream 2000 false Scaffold1822: 53203-55202 Capsella grandiflora
Cagra.1822s0015 5.0kb upstream 5.0kb upstream 13442 true Scaffold1822: 55203-68644 Capsella grandiflora
Cagra.1822s0015 5.0kb upstream 5.0kb upstream 5000 false Scaffold1822: 63645-68644 Capsella grandiflora
Cagra.1822s0015 5.0kb downstream 5.0kb downstream 13442 true Scaffold1822: 50203-63644 Capsella grandiflora
Cagra.1822s0015 5.0kb downstream 5.0kb downstream 5000 false Scaffold1822: 50203-55202 Capsella grandiflora
Cagra.1822s0015 10.0kb upstream 10.0kb upstream 18442 true Scaffold1822: 55203-73644 Capsella grandiflora
Cagra.1822s0015 10.0kb upstream 10.0kb upstream 10000 false Scaffold1822: 63645-73644 Capsella grandiflora
Cagra.1822s0015 10.0kb downstream 10.0kb downstream 18442 true Scaffold1822: 45203-63644 Capsella grandiflora
Cagra.1822s0015 10.0kb downstream 10.0kb downstream 10000 false Scaffold1822: 45203-55202 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367308 5261 Brassicaceae View MSA
123827577 5264 Brassicales-Malvales View MSA
124339999 5266 SBM View MSA
124237842 5268 Malvidae View MSA
124069157 5270 Rosid View MSA
123743717 5271 Pentapetalae View MSA
122786620 5272 Eudicot View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

0 Rna Seq Expressions

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