Protein Family : homeobox-1 124237842

Method ID:  5268 Method Name:  Malvidae
Sequence Alignment:  View MSA Member Count:  22
Paste the following link

22 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
30190.t000543 (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) R. communis v0.1 10250   30190: 94415-104664
orange1.1g000279m.g (1 of 1) PF05066 - HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) C. sinensis v1.1 10613   scaffold00007: 208273-218885
AT1G28420 (1 of 1) KOG2251 - Homeobox transcription factor A. thaliana TAIR10 HB-1 7837   Chr1: 9979802-9987638
Thhalv10006543m.g (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) E. salsugineum v1.0 8252   scaffold_5: 5305317-5313568
Ciclev10014023m.g (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) C. clementina v1.0 10057   scaffold_2: 33725772-33735828
Lus10025454.g (1 of 2) PF00046//PF02791//PF05066//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) L. usitatissimum v1.0 7456   scaffold46: 770598-778053
Lus10015325.g (1 of 2) KOG1951 - GTP-binding protein AARP2 involved in 40S ribosome biogenesis L. usitatissimum v1.0 7497   scaffold924: 508492-515988
Gorai.010G243500 (1 of 3) PF05066 - HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) G. raimondii v2.1 9491   Chr10: 61211545-61221035
Gorai.010G256900 (1 of 1) KOG0485 - Transcription factor NKX-5.1/HMX1, contains HOX domain G. raimondii v2.1 9499   Chr10: 62156078-62165576
Thecc1EG029805 (1 of 1) KOG0485//KOG2251 - Transcription factor NKX-5.1/HMX1, contains HOX domain // Homeobox transcription factor T. cacao v1.1 12239   scaffold_6: 24407600-24419838
Araha.5599s0006 (1 of 1) KOG2251 - Homeobox transcription factor A. halleri v1.1 8025   Scaffold5599: 28952-36976
Cagra.1822s0015 (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) C. grandiflora v1.1 8442   Scaffold1822: 55203-63644
Brara.I02942 (1 of 2) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) B. rapa FPsc v1.3 7591   A09: 28571824-28579414
Bostr.15697s0165 (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) B. stricta v1.2 8419   Scaffold15697: 1005130-1013548
SapurV1A.0032s0540 (1 of 1) PF00046//PF02791//PF05066//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) S. purpurea v1.0 11494   chr11: 3962867-3974360
SapurV1A.0012s0660 (1 of 3) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) S. purpurea v1.0 11250   chr04: 2846980-2858229
Manes.17G049300 (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) M. esculenta v6.1 11552   Chromosome17: 18681545-18693096
AL1G42050 (1 of 1) KOG2251 - Homeobox transcription factor A. lyrata v2.1 7876   scaffold_1: 12586842-12594717
Potri.011G057700 (1 of 1) PF00046//PF02791//PF05066//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) P. trichocarpa v3.1 13415   Chr11: 5084703-5098117
Podel.04G052400 (1 of 3) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) P. deltoides WV94 v2.1 11720   Chr04: 4404121-4415840
Podel.11G052500 (1 of 1) PF00046//PF02791//PF05066//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) P. deltoides WV94 v2.1 11450   Chr11: 4817086-4828535
Carub.0001s2690 (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) C. rubella v1.1 8423   scaffold_1: 9774200-9782622

22 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
30190.m011307 R. communis v0.1 124237842 homeobox-1 1 5268 Malvidae
AT1G28420.1 A. thaliana TAIR10 124237842 homeobox-1 1 5268 Malvidae
Lus10025454 L. usitatissimum v1.0 124237842 homeobox-1 2 5268 Malvidae
Lus10015325 L. usitatissimum v1.0 124237842 homeobox-1 2 5268 Malvidae
Brara.I02942.1.p B. rapa FPsc v1.3 124237842 homeobox-1 1 5268 Malvidae
Bostr.15697s0165.1.p B. stricta v1.2 124237842 homeobox-1 1 5268 Malvidae
Potri.011G057700.1.p P. trichocarpa v3.1 124237842 homeobox-1 1 5268 Malvidae
orange1.1g000279m C. sinensis v1.1 124237842 homeobox-1 1 5268 Malvidae
Thhalv10006543m E. salsugineum v1.0 124237842 homeobox-1 1 5268 Malvidae
Ciclev10014023m C. clementina v1.0 124237842 homeobox-1 1 5268 Malvidae
Gorai.010G256900.1 G. raimondii v2.1 124237842 homeobox-1 2 5268 Malvidae
Gorai.010G243500.1 G. raimondii v2.1 124237842 homeobox-1 2 5268 Malvidae
Thecc1EG029805t2 T. cacao v1.1 124237842 homeobox-1 1 5268 Malvidae
Araha.5599s0006.1.p A. halleri v1.1 124237842 homeobox-1 1 5268 Malvidae
Cagra.1822s0015.1.p C. grandiflora v1.1 124237842 homeobox-1 1 5268 Malvidae
SapurV1A.0032s0540.1.p S. purpurea v1.0 124237842 homeobox-1 2 5268 Malvidae
SapurV1A.0012s0660.1.p S. purpurea v1.0 124237842 homeobox-1 2 5268 Malvidae
Manes.17G049300.1.p M. esculenta v6.1 124237842 homeobox-1 1 5268 Malvidae
AL1G42050.t1 A. lyrata v2.1 124237842 homeobox-1 1 5268 Malvidae
Podel.04G052400.1.p P. deltoides WV94 v2.1 124237842 homeobox-1 2 5268 Malvidae
Podel.11G052500.1.p P. deltoides WV94 v2.1 124237842 homeobox-1 2 5268 Malvidae
Carub.0001s2690.1.p C. rubella v1.1 124237842 homeobox-1 1 5268 Malvidae