Gene : HB-1 A. thaliana TAIR10
Primary Identifier:  ? AT1G28420 Defline:  (1 of 1) KOG2251 - Homeobox transcription factor
Genomic Order:  2829 Name:  ? AT1G28420
Secondary Identifier:  ? PAC:19655477
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G28420 0.5kb upstream 0.5kb upstream 8337 true Chr1: 9979302-9987638 Arabidopsis thaliana
AT1G28420 0.5kb upstream 0.5kb upstream 500 false Chr1: 9979302-9979801 Arabidopsis thaliana
AT1G28420 0.5kb downstream 0.5kb downstream 8337 true Chr1: 9979802-9988138 Arabidopsis thaliana
AT1G28420 0.5kb downstream 0.5kb downstream 500 false Chr1: 9987639-9988138 Arabidopsis thaliana
AT1G28420 1.0kb upstream 1.0kb upstream 8837 true Chr1: 9978802-9987638 Arabidopsis thaliana
AT1G28420 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9978802-9979801 Arabidopsis thaliana
AT1G28420 1.0kb downstream 1.0kb downstream 8837 true Chr1: 9979802-9988638 Arabidopsis thaliana
AT1G28420 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9987639-9988638 Arabidopsis thaliana
AT1G28420 2.0kb upstream 2.0kb upstream 9837 true Chr1: 9977802-9987638 Arabidopsis thaliana
AT1G28420 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9977802-9979801 Arabidopsis thaliana
AT1G28420 2.0kb downstream 2.0kb downstream 9837 true Chr1: 9979802-9989638 Arabidopsis thaliana
AT1G28420 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9987639-9989638 Arabidopsis thaliana
AT1G28420 5.0kb upstream 5.0kb upstream 12837 true Chr1: 9974802-9987638 Arabidopsis thaliana
AT1G28420 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9974802-9979801 Arabidopsis thaliana
AT1G28420 5.0kb downstream 5.0kb downstream 12837 true Chr1: 9979802-9992638 Arabidopsis thaliana
AT1G28420 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9987639-9992638 Arabidopsis thaliana
AT1G28420 10.0kb upstream 10.0kb upstream 17837 true Chr1: 9969802-9987638 Arabidopsis thaliana
AT1G28420 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9969802-9979801 Arabidopsis thaliana
AT1G28420 10.0kb downstream 10.0kb downstream 17837 true Chr1: 9979802-9997638 Arabidopsis thaliana
AT1G28420 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9987639-9997638 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367308 5261 Brassicaceae View MSA
123827577 5264 Brassicales-Malvales View MSA
124339999 5266 SBM View MSA
124237842 5268 Malvidae View MSA
124069157 5270 Rosid View MSA
123743717 5271 Pentapetalae View MSA
122786620 5272 Eudicot View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.081        
cufflinks 11.605        
cufflinks 7.538       Low
cufflinks 12.449       High
cufflinks 7.921        
cufflinks 11.506        

0 Strain