Gene : Cagra.2171s0017 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10966 - TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 Genomic Order:  17
Name:  ? Cagra.2171s0017 Secondary Identifier:  ? PAC:28898633
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2171s0017 0.5kb upstream 0.5kb upstream 2042 true Scaffold2171: 68952-70993 Capsella grandiflora
Cagra.2171s0017 0.5kb upstream 0.5kb upstream 111 false Scaffold2171: 70883-70993 Capsella grandiflora
Cagra.2171s0017 0.5kb downstream 0.5kb downstream 2431 true Scaffold2171: 68452-70882 Capsella grandiflora
Cagra.2171s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold2171: 68452-68951 Capsella grandiflora
Cagra.2171s0017 1.0kb upstream 1.0kb upstream 2042 true Scaffold2171: 68952-70993 Capsella grandiflora
Cagra.2171s0017 1.0kb upstream 1.0kb upstream 111 false Scaffold2171: 70883-70993 Capsella grandiflora
Cagra.2171s0017 1.0kb downstream 1.0kb downstream 2931 true Scaffold2171: 67952-70882 Capsella grandiflora
Cagra.2171s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold2171: 67952-68951 Capsella grandiflora
Cagra.2171s0017 2.0kb upstream 2.0kb upstream 2042 true Scaffold2171: 68952-70993 Capsella grandiflora
Cagra.2171s0017 2.0kb upstream 2.0kb upstream 111 false Scaffold2171: 70883-70993 Capsella grandiflora
Cagra.2171s0017 2.0kb downstream 2.0kb downstream 3931 true Scaffold2171: 66952-70882 Capsella grandiflora
Cagra.2171s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold2171: 66952-68951 Capsella grandiflora
Cagra.2171s0017 5.0kb upstream 5.0kb upstream 2042 true Scaffold2171: 68952-70993 Capsella grandiflora
Cagra.2171s0017 5.0kb upstream 5.0kb upstream 111 false Scaffold2171: 70883-70993 Capsella grandiflora
Cagra.2171s0017 5.0kb downstream 5.0kb downstream 6931 true Scaffold2171: 63952-70882 Capsella grandiflora
Cagra.2171s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold2171: 63952-68951 Capsella grandiflora
Cagra.2171s0017 10.0kb upstream 10.0kb upstream 2042 true Scaffold2171: 68952-70993 Capsella grandiflora
Cagra.2171s0017 10.0kb upstream 10.0kb upstream 111 false Scaffold2171: 70883-70993 Capsella grandiflora
Cagra.2171s0017 10.0kb downstream 10.0kb downstream 11931 true Scaffold2171: 58952-70882 Capsella grandiflora
Cagra.2171s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold2171: 58952-68951 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364167 5261 Brassicaceae View MSA
123839671 5264 Brassicales-Malvales View MSA
124342942 5266 SBM View MSA
124244097 5268 Malvidae View MSA
124060415 5270 Rosid View MSA
123747373 5271 Pentapetalae View MSA
122787968 5272 Eudicot View MSA
122045425 5273 Angiosperm View MSA
121349813 5274 Embryophyte View MSA
123423825 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain