Gene : Cagra.2460s0041 C. grandiflora v1.1
Defline:  (1 of 2) PTHR12313:SF2 - E3 UBIQUITIN-PROTEIN LIGASE RMA3 Genomic Order:  41
Name:  ? Cagra.2460s0041 Secondary Identifier:  ? PAC:28897503
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2460s0041 0.5kb upstream 0.5kb upstream 2004 true Scaffold2460: 136560-138563 Capsella grandiflora
Cagra.2460s0041 0.5kb upstream 0.5kb upstream 500 false Scaffold2460: 138064-138563 Capsella grandiflora
Cagra.2460s0041 0.5kb downstream 0.5kb downstream 2004 true Scaffold2460: 136060-138063 Capsella grandiflora
Cagra.2460s0041 0.5kb downstream 0.5kb downstream 500 false Scaffold2460: 136060-136559 Capsella grandiflora
Cagra.2460s0041 1.0kb upstream 1.0kb upstream 2504 true Scaffold2460: 136560-139063 Capsella grandiflora
Cagra.2460s0041 1.0kb upstream 1.0kb upstream 1000 false Scaffold2460: 138064-139063 Capsella grandiflora
Cagra.2460s0041 1.0kb downstream 1.0kb downstream 2504 true Scaffold2460: 135560-138063 Capsella grandiflora
Cagra.2460s0041 1.0kb downstream 1.0kb downstream 1000 false Scaffold2460: 135560-136559 Capsella grandiflora
Cagra.2460s0041 2.0kb upstream 2.0kb upstream 3504 true Scaffold2460: 136560-140063 Capsella grandiflora
Cagra.2460s0041 2.0kb upstream 2.0kb upstream 2000 false Scaffold2460: 138064-140063 Capsella grandiflora
Cagra.2460s0041 2.0kb downstream 2.0kb downstream 3504 true Scaffold2460: 134560-138063 Capsella grandiflora
Cagra.2460s0041 2.0kb downstream 2.0kb downstream 2000 false Scaffold2460: 134560-136559 Capsella grandiflora
Cagra.2460s0041 5.0kb upstream 5.0kb upstream 6504 true Scaffold2460: 136560-143063 Capsella grandiflora
Cagra.2460s0041 5.0kb upstream 5.0kb upstream 5000 false Scaffold2460: 138064-143063 Capsella grandiflora
Cagra.2460s0041 5.0kb downstream 5.0kb downstream 6504 true Scaffold2460: 131560-138063 Capsella grandiflora
Cagra.2460s0041 5.0kb downstream 5.0kb downstream 5000 false Scaffold2460: 131560-136559 Capsella grandiflora
Cagra.2460s0041 10.0kb upstream 10.0kb upstream 11504 true Scaffold2460: 136560-148063 Capsella grandiflora
Cagra.2460s0041 10.0kb upstream 10.0kb upstream 10000 false Scaffold2460: 138064-148063 Capsella grandiflora
Cagra.2460s0041 10.0kb downstream 10.0kb downstream 11504 true Scaffold2460: 126560-138063 Capsella grandiflora
Cagra.2460s0041 10.0kb downstream 10.0kb downstream 10000 false Scaffold2460: 126560-136559 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375964 5261 Brassicaceae View MSA
123840591 5264 Brassicales-Malvales View MSA
124340253 5266 SBM View MSA
124252908 5268 Malvidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain