Gene : Cagra.4395s0045 C. grandiflora v1.1
Defline:  (1 of 1) PTHR33970:SF1 - VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC Genomic Order:  45
Name:  ? Cagra.4395s0045 Secondary Identifier:  ? PAC:28898467
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CAROTENOID-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5945 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4395s0045 0.5kb upstream 0.5kb upstream 2898 true Scaffold4395: 177832-180729 Capsella grandiflora
Cagra.4395s0045 0.5kb upstream 0.5kb upstream 500 false Scaffold4395: 177832-178331 Capsella grandiflora
Cagra.4395s0045 0.5kb downstream 0.5kb downstream 2898 true Scaffold4395: 178332-181229 Capsella grandiflora
Cagra.4395s0045 0.5kb downstream 0.5kb downstream 500 false Scaffold4395: 180730-181229 Capsella grandiflora
Cagra.4395s0045 1.0kb upstream 1.0kb upstream 3398 true Scaffold4395: 177332-180729 Capsella grandiflora
Cagra.4395s0045 1.0kb upstream 1.0kb upstream 1000 false Scaffold4395: 177332-178331 Capsella grandiflora
Cagra.4395s0045 1.0kb downstream 1.0kb downstream 3398 true Scaffold4395: 178332-181729 Capsella grandiflora
Cagra.4395s0045 1.0kb downstream 1.0kb downstream 1000 false Scaffold4395: 180730-181729 Capsella grandiflora
Cagra.4395s0045 2.0kb upstream 2.0kb upstream 4398 true Scaffold4395: 176332-180729 Capsella grandiflora
Cagra.4395s0045 2.0kb upstream 2.0kb upstream 2000 false Scaffold4395: 176332-178331 Capsella grandiflora
Cagra.4395s0045 2.0kb downstream 2.0kb downstream 4398 true Scaffold4395: 178332-182729 Capsella grandiflora
Cagra.4395s0045 2.0kb downstream 2.0kb downstream 2000 false Scaffold4395: 180730-182729 Capsella grandiflora
Cagra.4395s0045 5.0kb upstream 5.0kb upstream 7398 true Scaffold4395: 173332-180729 Capsella grandiflora
Cagra.4395s0045 5.0kb upstream 5.0kb upstream 5000 false Scaffold4395: 173332-178331 Capsella grandiflora
Cagra.4395s0045 5.0kb downstream 5.0kb downstream 7398 true Scaffold4395: 178332-185729 Capsella grandiflora
Cagra.4395s0045 5.0kb downstream 5.0kb downstream 5000 false Scaffold4395: 180730-185729 Capsella grandiflora
Cagra.4395s0045 10.0kb upstream 10.0kb upstream 12398 true Scaffold4395: 168332-180729 Capsella grandiflora
Cagra.4395s0045 10.0kb upstream 10.0kb upstream 10000 false Scaffold4395: 168332-178331 Capsella grandiflora
Cagra.4395s0045 10.0kb downstream 10.0kb downstream 12398 true Scaffold4395: 178332-190729 Capsella grandiflora
Cagra.4395s0045 10.0kb downstream 10.0kb downstream 10000 false Scaffold4395: 180730-190729 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369962 5261 Brassicaceae View MSA
123830593 5264 Brassicales-Malvales View MSA
124344334 5266 SBM View MSA
124238340 5268 Malvidae View MSA
124063145 5270 Rosid View MSA
123739304 5271 Pentapetalae View MSA
122790516 5272 Eudicot View MSA
122041813 5273 Angiosperm View MSA
121344367 5274 Embryophyte View MSA
123425421 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain