Gene : Cagra.5118s0047 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10625:SF109 - HISTONE DEACETYLASE 2 Genomic Order:  47
Name:  ? Cagra.5118s0047 Secondary Identifier:  ? PAC:28905922
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5118s0047 0.5kb upstream 0.5kb upstream 3258 true Scaffold5118: 170743-174000 Capsella grandiflora
Cagra.5118s0047 0.5kb upstream 0.5kb upstream 500 false Scaffold5118: 173501-174000 Capsella grandiflora
Cagra.5118s0047 0.5kb downstream 0.5kb downstream 3258 true Scaffold5118: 170243-173500 Capsella grandiflora
Cagra.5118s0047 0.5kb downstream 0.5kb downstream 500 false Scaffold5118: 170243-170742 Capsella grandiflora
Cagra.5118s0047 1.0kb upstream 1.0kb upstream 3758 true Scaffold5118: 170743-174500 Capsella grandiflora
Cagra.5118s0047 1.0kb upstream 1.0kb upstream 1000 false Scaffold5118: 173501-174500 Capsella grandiflora
Cagra.5118s0047 1.0kb downstream 1.0kb downstream 3758 true Scaffold5118: 169743-173500 Capsella grandiflora
Cagra.5118s0047 1.0kb downstream 1.0kb downstream 1000 false Scaffold5118: 169743-170742 Capsella grandiflora
Cagra.5118s0047 2.0kb upstream 2.0kb upstream 4758 true Scaffold5118: 170743-175500 Capsella grandiflora
Cagra.5118s0047 2.0kb upstream 2.0kb upstream 2000 false Scaffold5118: 173501-175500 Capsella grandiflora
Cagra.5118s0047 2.0kb downstream 2.0kb downstream 4758 true Scaffold5118: 168743-173500 Capsella grandiflora
Cagra.5118s0047 2.0kb downstream 2.0kb downstream 2000 false Scaffold5118: 168743-170742 Capsella grandiflora
Cagra.5118s0047 5.0kb upstream 5.0kb upstream 7758 true Scaffold5118: 170743-178500 Capsella grandiflora
Cagra.5118s0047 5.0kb upstream 5.0kb upstream 5000 false Scaffold5118: 173501-178500 Capsella grandiflora
Cagra.5118s0047 5.0kb downstream 5.0kb downstream 7758 true Scaffold5118: 165743-173500 Capsella grandiflora
Cagra.5118s0047 5.0kb downstream 5.0kb downstream 5000 false Scaffold5118: 165743-170742 Capsella grandiflora
Cagra.5118s0047 10.0kb upstream 10.0kb upstream 12561 true Scaffold5118: 170743-183303 Capsella grandiflora
Cagra.5118s0047 10.0kb upstream 10.0kb upstream 9803 false Scaffold5118: 173501-183303 Capsella grandiflora
Cagra.5118s0047 10.0kb downstream 10.0kb downstream 12758 true Scaffold5118: 160743-173500 Capsella grandiflora
Cagra.5118s0047 10.0kb downstream 10.0kb downstream 10000 false Scaffold5118: 160743-170742 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362858 5261 Brassicaceae View MSA
123834309 5264 Brassicales-Malvales View MSA
124338395 5266 SBM View MSA
124239133 5268 Malvidae View MSA
124068435 5270 Rosid View MSA
123739181 5271 Pentapetalae View MSA
122793784 5272 Eudicot View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain