Gene : Cagra.6943s0023 C. grandiflora v1.1
Defline:  (1 of 1) PTHR30544//PTHR30544:SF2 - 23S RRNA METHYLTRANSFERASE Genomic Order:  23
Name:  ? Cagra.6943s0023 Secondary Identifier:  ? PAC:28894524
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6943s0023 0.5kb upstream 0.5kb upstream 2916 true Scaffold6943: 76550-79465 Capsella grandiflora
Cagra.6943s0023 0.5kb upstream 0.5kb upstream 500 false Scaffold6943: 76550-77049 Capsella grandiflora
Cagra.6943s0023 0.5kb downstream 0.5kb downstream 2916 true Scaffold6943: 77050-79965 Capsella grandiflora
Cagra.6943s0023 0.5kb downstream 0.5kb downstream 500 false Scaffold6943: 79466-79965 Capsella grandiflora
Cagra.6943s0023 1.0kb upstream 1.0kb upstream 3416 true Scaffold6943: 76050-79465 Capsella grandiflora
Cagra.6943s0023 1.0kb upstream 1.0kb upstream 1000 false Scaffold6943: 76050-77049 Capsella grandiflora
Cagra.6943s0023 1.0kb downstream 1.0kb downstream 3416 true Scaffold6943: 77050-80465 Capsella grandiflora
Cagra.6943s0023 1.0kb downstream 1.0kb downstream 1000 false Scaffold6943: 79466-80465 Capsella grandiflora
Cagra.6943s0023 2.0kb upstream 2.0kb upstream 4416 true Scaffold6943: 75050-79465 Capsella grandiflora
Cagra.6943s0023 2.0kb upstream 2.0kb upstream 2000 false Scaffold6943: 75050-77049 Capsella grandiflora
Cagra.6943s0023 2.0kb downstream 2.0kb downstream 4416 true Scaffold6943: 77050-81465 Capsella grandiflora
Cagra.6943s0023 2.0kb downstream 2.0kb downstream 2000 false Scaffold6943: 79466-81465 Capsella grandiflora
Cagra.6943s0023 5.0kb upstream 5.0kb upstream 7416 true Scaffold6943: 72050-79465 Capsella grandiflora
Cagra.6943s0023 5.0kb upstream 5.0kb upstream 5000 false Scaffold6943: 72050-77049 Capsella grandiflora
Cagra.6943s0023 5.0kb downstream 5.0kb downstream 7416 true Scaffold6943: 77050-84465 Capsella grandiflora
Cagra.6943s0023 5.0kb downstream 5.0kb downstream 5000 false Scaffold6943: 79466-84465 Capsella grandiflora
Cagra.6943s0023 10.0kb upstream 10.0kb upstream 12416 true Scaffold6943: 67050-79465 Capsella grandiflora
Cagra.6943s0023 10.0kb upstream 10.0kb upstream 10000 false Scaffold6943: 67050-77049 Capsella grandiflora
Cagra.6943s0023 10.0kb downstream 10.0kb downstream 12416 true Scaffold6943: 77050-89465 Capsella grandiflora
Cagra.6943s0023 10.0kb downstream 10.0kb downstream 10000 false Scaffold6943: 79466-89465 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361810 5261 Brassicaceae View MSA
123829469 5264 Brassicales-Malvales View MSA
124346141 5266 SBM View MSA
124239215 5268 Malvidae View MSA
124068873 5270 Rosid View MSA
123737735 5271 Pentapetalae View MSA
122788749 5272 Eudicot View MSA
122042435 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain