Gene : Cagra.16778s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23079:SF5 - RNA-DEPENDENT RNA POLYMERASE 2 Genomic Order:  4
Name:  ? Cagra.16778s0004 Secondary Identifier:  ? PAC:28909811
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.16778s0004 0.5kb upstream 0.5kb upstream 4653 true Scaffold16778: 11417-16069 Capsella grandiflora
Cagra.16778s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold16778: 11417-11916 Capsella grandiflora
Cagra.16778s0004 0.5kb downstream 0.5kb downstream 4653 true Scaffold16778: 11917-16569 Capsella grandiflora
Cagra.16778s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold16778: 16070-16569 Capsella grandiflora
Cagra.16778s0004 1.0kb upstream 1.0kb upstream 5153 true Scaffold16778: 10917-16069 Capsella grandiflora
Cagra.16778s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold16778: 10917-11916 Capsella grandiflora
Cagra.16778s0004 1.0kb downstream 1.0kb downstream 5153 true Scaffold16778: 11917-17069 Capsella grandiflora
Cagra.16778s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold16778: 16070-17069 Capsella grandiflora
Cagra.16778s0004 2.0kb upstream 2.0kb upstream 6153 true Scaffold16778: 9917-16069 Capsella grandiflora
Cagra.16778s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold16778: 9917-11916 Capsella grandiflora
Cagra.16778s0004 2.0kb downstream 2.0kb downstream 6153 true Scaffold16778: 11917-18069 Capsella grandiflora
Cagra.16778s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold16778: 16070-18069 Capsella grandiflora
Cagra.16778s0004 5.0kb upstream 5.0kb upstream 9153 true Scaffold16778: 6917-16069 Capsella grandiflora
Cagra.16778s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold16778: 6917-11916 Capsella grandiflora
Cagra.16778s0004 5.0kb downstream 5.0kb downstream 7489 true Scaffold16778: 11917-19405 Capsella grandiflora
Cagra.16778s0004 5.0kb downstream 5.0kb downstream 3336 false Scaffold16778: 16070-19405 Capsella grandiflora
Cagra.16778s0004 10.0kb upstream 10.0kb upstream 14153 true Scaffold16778: 1917-16069 Capsella grandiflora
Cagra.16778s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold16778: 1917-11916 Capsella grandiflora
Cagra.16778s0004 10.0kb downstream 10.0kb downstream 7489 true Scaffold16778: 11917-19405 Capsella grandiflora
Cagra.16778s0004 10.0kb downstream 10.0kb downstream 3336 false Scaffold16778: 16070-19405 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368937 5261 Brassicaceae View MSA
123830340 5264 Brassicales-Malvales View MSA
124321664 5266 SBM View MSA
124240918 5268 Malvidae View MSA
124065042 5270 Rosid View MSA
123747025 5271 Pentapetalae View MSA
122788970 5272 Eudicot View MSA
122044390 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain