Gene : Cagra.1681s0038 C. grandiflora v1.1
Defline:  (1 of 3) PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN Genomic Order:  38
Name:  ? Cagra.1681s0038 Secondary Identifier:  ? PAC:28905319
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1681s0038 0.5kb upstream 0.5kb upstream 1778 true Scaffold1681: 133927-135704 Capsella grandiflora
Cagra.1681s0038 0.5kb upstream 0.5kb upstream 500 false Scaffold1681: 135205-135704 Capsella grandiflora
Cagra.1681s0038 0.5kb downstream 0.5kb downstream 1778 true Scaffold1681: 133427-135204 Capsella grandiflora
Cagra.1681s0038 0.5kb downstream 0.5kb downstream 500 false Scaffold1681: 133427-133926 Capsella grandiflora
Cagra.1681s0038 1.0kb upstream 1.0kb upstream 2278 true Scaffold1681: 133927-136204 Capsella grandiflora
Cagra.1681s0038 1.0kb upstream 1.0kb upstream 1000 false Scaffold1681: 135205-136204 Capsella grandiflora
Cagra.1681s0038 1.0kb downstream 1.0kb downstream 2278 true Scaffold1681: 132927-135204 Capsella grandiflora
Cagra.1681s0038 1.0kb downstream 1.0kb downstream 1000 false Scaffold1681: 132927-133926 Capsella grandiflora
Cagra.1681s0038 2.0kb upstream 2.0kb upstream 3278 true Scaffold1681: 133927-137204 Capsella grandiflora
Cagra.1681s0038 2.0kb upstream 2.0kb upstream 2000 false Scaffold1681: 135205-137204 Capsella grandiflora
Cagra.1681s0038 2.0kb downstream 2.0kb downstream 3278 true Scaffold1681: 131927-135204 Capsella grandiflora
Cagra.1681s0038 2.0kb downstream 2.0kb downstream 2000 false Scaffold1681: 131927-133926 Capsella grandiflora
Cagra.1681s0038 5.0kb upstream 5.0kb upstream 6278 true Scaffold1681: 133927-140204 Capsella grandiflora
Cagra.1681s0038 5.0kb upstream 5.0kb upstream 5000 false Scaffold1681: 135205-140204 Capsella grandiflora
Cagra.1681s0038 5.0kb downstream 5.0kb downstream 6278 true Scaffold1681: 128927-135204 Capsella grandiflora
Cagra.1681s0038 5.0kb downstream 5.0kb downstream 5000 false Scaffold1681: 128927-133926 Capsella grandiflora
Cagra.1681s0038 10.0kb upstream 10.0kb upstream 11278 true Scaffold1681: 133927-145204 Capsella grandiflora
Cagra.1681s0038 10.0kb upstream 10.0kb upstream 10000 false Scaffold1681: 135205-145204 Capsella grandiflora
Cagra.1681s0038 10.0kb downstream 10.0kb downstream 11278 true Scaffold1681: 123927-135204 Capsella grandiflora
Cagra.1681s0038 10.0kb downstream 10.0kb downstream 10000 false Scaffold1681: 123927-133926 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377515 5261 Brassicaceae View MSA
123841701 5264 Brassicales-Malvales View MSA
124351138 5266 SBM View MSA
124239746 5268 Malvidae View MSA
124071729 5270 Rosid View MSA
123744205 5271 Pentapetalae View MSA
122785881 5272 Eudicot View MSA
122041845 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain