Gene : Cagra.3910s0004 C. grandiflora v1.1
Defline:  (1 of 2) PF00098//PF03732 - Zinc knuckle (zf-CCHC) // Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  4
Name:  ? Cagra.3910s0004 Secondary Identifier:  ? PAC:28903333
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3910s0004 0.5kb upstream 0.5kb upstream 1352 true Scaffold3910: 29164-30515 Capsella grandiflora
Cagra.3910s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold3910: 30016-30515 Capsella grandiflora
Cagra.3910s0004 0.5kb downstream 0.5kb downstream 1352 true Scaffold3910: 28664-30015 Capsella grandiflora
Cagra.3910s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold3910: 28664-29163 Capsella grandiflora
Cagra.3910s0004 1.0kb upstream 1.0kb upstream 1852 true Scaffold3910: 29164-31015 Capsella grandiflora
Cagra.3910s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold3910: 30016-31015 Capsella grandiflora
Cagra.3910s0004 1.0kb downstream 1.0kb downstream 1852 true Scaffold3910: 28164-30015 Capsella grandiflora
Cagra.3910s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold3910: 28164-29163 Capsella grandiflora
Cagra.3910s0004 2.0kb upstream 2.0kb upstream 2852 true Scaffold3910: 29164-32015 Capsella grandiflora
Cagra.3910s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold3910: 30016-32015 Capsella grandiflora
Cagra.3910s0004 2.0kb downstream 2.0kb downstream 2852 true Scaffold3910: 27164-30015 Capsella grandiflora
Cagra.3910s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold3910: 27164-29163 Capsella grandiflora
Cagra.3910s0004 5.0kb upstream 5.0kb upstream 5852 true Scaffold3910: 29164-35015 Capsella grandiflora
Cagra.3910s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold3910: 30016-35015 Capsella grandiflora
Cagra.3910s0004 5.0kb downstream 5.0kb downstream 5852 true Scaffold3910: 24164-30015 Capsella grandiflora
Cagra.3910s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold3910: 24164-29163 Capsella grandiflora
Cagra.3910s0004 10.0kb upstream 10.0kb upstream 10852 true Scaffold3910: 29164-40015 Capsella grandiflora
Cagra.3910s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold3910: 30016-40015 Capsella grandiflora
Cagra.3910s0004 10.0kb downstream 10.0kb downstream 10852 true Scaffold3910: 19164-30015 Capsella grandiflora
Cagra.3910s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold3910: 19164-29163 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333665 5261 Brassicaceae Singleton cluster - no MSA
123774586 5264 Brassicales-Malvales Singleton cluster - no MSA
124273020 5266 SBM Singleton cluster - no MSA
124250099 5268 Malvidae View MSA
124074296 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain