Gene : MD16G1192200 M. domestica v1.1
Defline:  (1 of 2) PF00665//PF07727//PF14223 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  1705
Name:  ? MD16G1192200 Secondary Identifier:  ? PAC:40109325
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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
MD16G1192200 0.5kb upstream 0.5kb upstream 4267 true Chr16: 16988491-16992757 Malus domestica
MD16G1192200 0.5kb upstream 0.5kb upstream 500 false Chr16: 16992258-16992757 Malus domestica
MD16G1192200 0.5kb downstream 0.5kb downstream 4267 true Chr16: 16987991-16992257 Malus domestica
MD16G1192200 0.5kb downstream 0.5kb downstream 500 false Chr16: 16987991-16988490 Malus domestica
MD16G1192200 1.0kb upstream 1.0kb upstream 4767 true Chr16: 16988491-16993257 Malus domestica
MD16G1192200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 16992258-16993257 Malus domestica
MD16G1192200 1.0kb downstream 1.0kb downstream 4767 true Chr16: 16987491-16992257 Malus domestica
MD16G1192200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 16987491-16988490 Malus domestica
MD16G1192200 2.0kb upstream 2.0kb upstream 5767 true Chr16: 16988491-16994257 Malus domestica
MD16G1192200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 16992258-16994257 Malus domestica
MD16G1192200 2.0kb downstream 2.0kb downstream 5767 true Chr16: 16986491-16992257 Malus domestica
MD16G1192200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 16986491-16988490 Malus domestica
MD16G1192200 5.0kb upstream 5.0kb upstream 8767 true Chr16: 16988491-16997257 Malus domestica
MD16G1192200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 16992258-16997257 Malus domestica
MD16G1192200 5.0kb downstream 5.0kb downstream 8767 true Chr16: 16983491-16992257 Malus domestica
MD16G1192200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 16983491-16988490 Malus domestica
MD16G1192200 10.0kb upstream 10.0kb upstream 13767 true Chr16: 16988491-17002257 Malus domestica
MD16G1192200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 16992258-17002257 Malus domestica
MD16G1192200 10.0kb downstream 10.0kb downstream 13767 true Chr16: 16978491-16992257 Malus domestica
MD16G1192200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 16978491-16988490 Malus domestica

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029855 5273 Angiosperm View MSA
122237559 5265 Fabidae View MSA
124038205 5270 Rosid View MSA
123753008 5271 Pentapetalae View MSA
122774914 5272 Eudicot View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain