Protein Family : Cysteine proteinase Cathepsin L 124038205

Method ID:  5270 Method Name:  Rosid
Sequence Alignment:  View MSA Member Count:  31
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31 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
Cucsa.078320 (1 of 85) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON C. sativus v1.0 3754   scaffold00793: 635975-639728
Cucsa.149360 (1 of 21) PTHR11439//PTHR11439:SF192 - GAG-POL-RELATED RETROTRANSPOSON C. sativus v1.0 3952   scaffold01110: 195445-199396
Cucsa.300520 (1 of 1) PF07727//PF13976//PF14227 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) C. sativus v1.0 4018   scaffold02931: 25938-29955
Thecc1EG003333 (1 of 14) PF07727//PF14223 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2) T. cacao v1.1 5424   scaffold_1: 22004585-22010008
Thecc1EG045040 (1 of 2) PF00665//PF07727//PF13961//PF13976//PF14223 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // Domain of unknown function (DUF4219) (DUF4219) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2) T. cacao v1.1 23458   scaffold_10r: 21939436-21962893
Thecc1EG022223 (1 of 10) PF00665//PF07727 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) T. cacao v1.1 3926   scaffold_5: 3223186-3227111
Thecc1EG026511 (1 of 3) PF00665//PF07727//PF13961//PF13976//PF14227 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // Domain of unknown function (DUF4219) (DUF4219) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) T. cacao v1.1 4996   scaffold_5: 38758101-38763096
Thecc1EG031690 (1 of 6) PF00665//PF07727 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) T. cacao v1.1 2779   scaffold_7: 6272655-6275433
Thecc1EG040572 (1 of 2) PF07727//PF13961//PF14223 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // Domain of unknown function (DUF4219) (DUF4219) // gag-polypeptide of LTR copia-type (UBN2) T. cacao v1.1 7189   scaffold_9: 31645302-31652490
Thecc1EG040529 (1 of 3) PF00665//PF07727//PF13961//PF13976//PF14227 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // Domain of unknown function (DUF4219) (DUF4219) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) T. cacao v1.1 15371   scaffold_9: 31123435-31138805
Thecc1EG040853 (1 of 2) PF00665//PF07727//PF14223 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2) T. cacao v1.1 6264   scaffold_9: 33950830-33957093
MD16G1192200 (1 of 2) PF00665//PF07727//PF14223 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2) M. domestica v1.1 3767   Chr16: 16988491-16992257
MD17G1077500 (1 of 27) K03549 - KUP system potassium uptake protein (kup) M. domestica v1.1 2139   Chr17: 6404349-6406487
MD15G1383000 (1 of 1) PF00098//PF00665//PF07727//PF13961//PF13976//PF14223 - Zinc knuckle (zf-CCHC) // Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // Domain of unknown function (DUF4219) (DUF4219) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2) M. domestica v1.1 5155   Chr15: 47179267-47184421
MD07G1274600 (1 of 1) PF00106//PF00665//PF07727 - short chain dehydrogenase (adh_short) // Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) M. domestica v1.1 5362   Chr07: 34004315-34009676
MD07G1028600 (1 of 2) PF00098//PF00665//PF07727//PF14227 - Zinc knuckle (zf-CCHC) // Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 4598   Chr07: 2370665-2375262
MD09G1238700 (1 of 1) PF00112//PF00665//PF07727//PF08246//PF13976 - Papain family cysteine protease (Peptidase_C1) // Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // Cathepsin propeptide inhibitor domain (I29) (Inhibitor_I29) // GAG-pre-integrase domain (gag_pre-integrs) M. domestica v1.1 5814   Chr09: 30367031-30372844
MD09G1044400 (1 of 2) PF00098//PF00665//PF07727//PF14227 - Zinc knuckle (zf-CCHC) // Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 5138   Chr09: 2875063-2880200
MD09G1044700 (1 of 2) PF00098//PF00665//PF07727//PF13976//PF14227 - Zinc knuckle (zf-CCHC) // Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 5062   Chr09: 2891707-2896768
MD00G1037700 (1 of 1) PF00098//PF07727//PF13976//PF14227 - Zinc knuckle (zf-CCHC) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 5750   Chr00: 6654398-6660147
MD10G1011700 (1 of 7) PF00665//PF07727//PF13976//PF14223 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2) M. domestica v1.1 3258   Chr10: 1582941-1586198
MD10G1162100 (1 of 1) PF00149//PF07727//PF13976//PF14008//PF14227 - Calcineurin-like phosphoesterase (Metallophos) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // Iron/zinc purple acid phosphatase-like protein C (Metallophos_C) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 6738   Chr10: 25290489-25297226
MD01G1101100 (1 of 3) PF00665//PF07727//PF13976//PF14227 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 3987   Chr01: 21412538-21416524
MD01G1129400 (1 of 3) PF00665//PF07727//PF13976//PF14227 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 4366   Chr01: 24037963-24042328
MD10G1071400 (1 of 1) PF00665//PF03492//PF07727//PF13976//PF14227 - Integrase core domain (rve) // SAM dependent carboxyl methyltransferase (Methyltransf_7) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 5775   Chr10: 9933295-9939069
MD08G1027200 (1 of 2) PF00098//PF00665//PF07727//PF13976//PF14227 - Zinc knuckle (zf-CCHC) // Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 4287   Chr08: 1986538-1990824
MD05G1104800 (1 of 3) PF00665//PF07727//PF13976//PF14227 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) M. domestica v1.1 5197   Chr05: 21799938-21805134
gene36171-v2.0.a2-hybrid (1 of 65) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED F. vesca v2.0.a2 6075   Fvb3: 4558728-4564802
gene37119-v2.0.a2-hybrid (1 of 65) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED F. vesca v2.0.a2 2278   Fvb5: 6627210-6629487
gene30122-v1.0-hybrid (1 of 2) PF00665//PF07727//PF13976//PF14227 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) F. vesca v2.0.a2 3975   Fvb6: 9732934-9736908

31 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Cucsa.300520.1 C. sativus v1.0 124038205 Cysteine proteinase Cathepsin L 3 5270 Rosid
Thecc1EG022223t1 T. cacao v1.1 124038205 Cysteine proteinase Cathepsin L 8 5270 Rosid
Thecc1EG040853t1 T. cacao v1.1 124038205 Cysteine proteinase Cathepsin L 8 5270 Rosid
Thecc1EG003333t1 T. cacao v1.1 124038205 Cysteine proteinase Cathepsin L 8 5270 Rosid
MD10G1162100 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD15G1383000 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD09G1044400 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD01G1101100 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
gene30122-v1.0-hybrid.t1 F. vesca v2.0.a2 124038205 Cysteine proteinase Cathepsin L 4 5270 Rosid
gene37119-v2.0.a2-hybrid.t1 F. vesca v2.0.a2 124038205 Cysteine proteinase Cathepsin L 4 5270 Rosid
Cucsa.149360.1 C. sativus v1.0 124038205 Cysteine proteinase Cathepsin L 3 5270 Rosid
Cucsa.078320.1 C. sativus v1.0 124038205 Cysteine proteinase Cathepsin L 3 5270 Rosid
Thecc1EG040572t1 T. cacao v1.1 124038205 Cysteine proteinase Cathepsin L 8 5270 Rosid
Thecc1EG026511t1 T. cacao v1.1 124038205 Cysteine proteinase Cathepsin L 8 5270 Rosid
Thecc1EG040529t1 T. cacao v1.1 124038205 Cysteine proteinase Cathepsin L 8 5270 Rosid
Thecc1EG031690t1 T. cacao v1.1 124038205 Cysteine proteinase Cathepsin L 8 5270 Rosid
Thecc1EG045040t1 T. cacao v1.1 124038205 Cysteine proteinase Cathepsin L 8 5270 Rosid
MD07G1028600 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD16G1192200 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD01G1129400 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD10G1071400 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD09G1044700 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD00G1037700 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD05G1104800 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD17G1077500 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD09G1238700 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD08G1027200 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD10G1011700 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
MD07G1274600 M. domestica v1.1 124038205 Cysteine proteinase Cathepsin L 16 5270 Rosid
gene36171-v2.0.a2-hybrid.t1 F. vesca v2.0.a2 124038205 Cysteine proteinase Cathepsin L 4 5270 Rosid