Gene : Thecc1EG040529 T. cacao v1.1
Defline:  (1 of 3) PF00665//PF07727//PF13961//PF13976//PF14227 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // Domain of unknown function (DUF4219) (DUF4219) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) Genomic Order:  2217
Name:  ? Thecc1EG040529 Secondary Identifier:  ? PAC:27426184
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG040529 0.5kb upstream 0.5kb upstream 15871 true scaffold_9: 31123435-31139305 Theobroma cacao
Thecc1EG040529 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 31138806-31139305 Theobroma cacao
Thecc1EG040529 0.5kb downstream 0.5kb downstream 15871 true scaffold_9: 31122935-31138805 Theobroma cacao
Thecc1EG040529 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 31122935-31123434 Theobroma cacao
Thecc1EG040529 1.0kb upstream 1.0kb upstream 16371 true scaffold_9: 31123435-31139805 Theobroma cacao
Thecc1EG040529 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 31138806-31139805 Theobroma cacao
Thecc1EG040529 1.0kb downstream 1.0kb downstream 16371 true scaffold_9: 31122435-31138805 Theobroma cacao
Thecc1EG040529 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 31122435-31123434 Theobroma cacao
Thecc1EG040529 2.0kb upstream 2.0kb upstream 17371 true scaffold_9: 31123435-31140805 Theobroma cacao
Thecc1EG040529 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 31138806-31140805 Theobroma cacao
Thecc1EG040529 2.0kb downstream 2.0kb downstream 17371 true scaffold_9: 31121435-31138805 Theobroma cacao
Thecc1EG040529 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 31121435-31123434 Theobroma cacao
Thecc1EG040529 5.0kb upstream 5.0kb upstream 20371 true scaffold_9: 31123435-31143805 Theobroma cacao
Thecc1EG040529 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 31138806-31143805 Theobroma cacao
Thecc1EG040529 5.0kb downstream 5.0kb downstream 20371 true scaffold_9: 31118435-31138805 Theobroma cacao
Thecc1EG040529 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 31118435-31123434 Theobroma cacao
Thecc1EG040529 10.0kb upstream 10.0kb upstream 25371 true scaffold_9: 31123435-31148805 Theobroma cacao
Thecc1EG040529 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 31138806-31148805 Theobroma cacao
Thecc1EG040529 10.0kb downstream 10.0kb downstream 25371 true scaffold_9: 31113435-31138805 Theobroma cacao
Thecc1EG040529 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 31113435-31123434 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029855 5273 Angiosperm View MSA
123823746 5264 Brassicales-Malvales View MSA
124319807 5266 SBM View MSA
124168319 5268 Malvidae View MSA
124038205 5270 Rosid View MSA
123753008 5271 Pentapetalae View MSA
122774914 5272 Eudicot View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain