Gene : Thecc1EG040572 T. cacao v1.1
Defline:  (1 of 2) PF07727//PF13961//PF14223 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // Domain of unknown function (DUF4219) (DUF4219) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  2242
Name:  ? Thecc1EG040572 Secondary Identifier:  ? PAC:27426510
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG040572 0.5kb upstream 0.5kb upstream 7689 true scaffold_9: 31644802-31652490 Theobroma cacao
Thecc1EG040572 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 31644802-31645301 Theobroma cacao
Thecc1EG040572 0.5kb downstream 0.5kb downstream 7689 true scaffold_9: 31645302-31652990 Theobroma cacao
Thecc1EG040572 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 31652491-31652990 Theobroma cacao
Thecc1EG040572 1.0kb upstream 1.0kb upstream 8189 true scaffold_9: 31644302-31652490 Theobroma cacao
Thecc1EG040572 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 31644302-31645301 Theobroma cacao
Thecc1EG040572 1.0kb downstream 1.0kb downstream 8189 true scaffold_9: 31645302-31653490 Theobroma cacao
Thecc1EG040572 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 31652491-31653490 Theobroma cacao
Thecc1EG040572 2.0kb upstream 2.0kb upstream 9189 true scaffold_9: 31643302-31652490 Theobroma cacao
Thecc1EG040572 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 31643302-31645301 Theobroma cacao
Thecc1EG040572 2.0kb downstream 2.0kb downstream 9189 true scaffold_9: 31645302-31654490 Theobroma cacao
Thecc1EG040572 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 31652491-31654490 Theobroma cacao
Thecc1EG040572 5.0kb upstream 5.0kb upstream 12189 true scaffold_9: 31640302-31652490 Theobroma cacao
Thecc1EG040572 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 31640302-31645301 Theobroma cacao
Thecc1EG040572 5.0kb downstream 5.0kb downstream 12189 true scaffold_9: 31645302-31657490 Theobroma cacao
Thecc1EG040572 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 31652491-31657490 Theobroma cacao
Thecc1EG040572 10.0kb upstream 10.0kb upstream 17189 true scaffold_9: 31635302-31652490 Theobroma cacao
Thecc1EG040572 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 31635302-31645301 Theobroma cacao
Thecc1EG040572 10.0kb downstream 10.0kb downstream 17189 true scaffold_9: 31645302-31662490 Theobroma cacao
Thecc1EG040572 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 31652491-31662490 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029855 5273 Angiosperm View MSA
123823905 5264 Brassicales-Malvales View MSA
124319958 5266 SBM View MSA
124168452 5268 Malvidae View MSA
124038205 5270 Rosid View MSA
123753008 5271 Pentapetalae View MSA
122774914 5272 Eudicot View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain