Gene : MD08G1027200 M. domestica v1.1
Defline:  (1 of 2) PF00098//PF00665//PF07727//PF13976//PF14227 - Zinc knuckle (zf-CCHC) // Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) Genomic Order:  236
Name:  ? MD08G1027200 Secondary Identifier:  ? PAC:40116190
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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
MD08G1027200 0.5kb upstream 0.5kb upstream 4787 true Chr08: 1986538-1991324 Malus domestica
MD08G1027200 0.5kb upstream 0.5kb upstream 500 false Chr08: 1990825-1991324 Malus domestica
MD08G1027200 0.5kb downstream 0.5kb downstream 4787 true Chr08: 1986038-1990824 Malus domestica
MD08G1027200 0.5kb downstream 0.5kb downstream 500 false Chr08: 1986038-1986537 Malus domestica
MD08G1027200 1.0kb upstream 1.0kb upstream 5287 true Chr08: 1986538-1991824 Malus domestica
MD08G1027200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1990825-1991824 Malus domestica
MD08G1027200 1.0kb downstream 1.0kb downstream 5287 true Chr08: 1985538-1990824 Malus domestica
MD08G1027200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1985538-1986537 Malus domestica
MD08G1027200 2.0kb upstream 2.0kb upstream 6287 true Chr08: 1986538-1992824 Malus domestica
MD08G1027200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1990825-1992824 Malus domestica
MD08G1027200 2.0kb downstream 2.0kb downstream 6287 true Chr08: 1984538-1990824 Malus domestica
MD08G1027200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1984538-1986537 Malus domestica
MD08G1027200 5.0kb upstream 5.0kb upstream 9287 true Chr08: 1986538-1995824 Malus domestica
MD08G1027200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1990825-1995824 Malus domestica
MD08G1027200 5.0kb downstream 5.0kb downstream 9287 true Chr08: 1981538-1990824 Malus domestica
MD08G1027200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1981538-1986537 Malus domestica
MD08G1027200 10.0kb upstream 10.0kb upstream 14287 true Chr08: 1986538-2000824 Malus domestica
MD08G1027200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1990825-2000824 Malus domestica
MD08G1027200 10.0kb downstream 10.0kb downstream 14287 true Chr08: 1976538-1990824 Malus domestica
MD08G1027200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1976538-1986537 Malus domestica

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029855 5273 Angiosperm View MSA
122237559 5265 Fabidae View MSA
124038205 5270 Rosid View MSA
123753008 5271 Pentapetalae View MSA
122774914 5272 Eudicot View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

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