Gene : HanXRQChr16g0517571 H. annuus r1.2
Defline:  (1 of 6) PF00665//PF03732//PF07727//PF13976 - Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) Genomic Order:  1793
Name:  ? HanXRQChr16g0517571 Secondary Identifier:  ? PAC:40301361
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
HanXRQChr16g0517571 0.5kb upstream 0.5kb upstream 5811   true HanXRQChr16: 117353976-117359786 Helianthus annuus
HanXRQChr16g0517571 0.5kb upstream 0.5kb upstream 500   false HanXRQChr16: 117353976-117354475 Helianthus annuus
HanXRQChr16g0517571 0.5kb downstream 0.5kb downstream 5811   true HanXRQChr16: 117354476-117360286 Helianthus annuus
HanXRQChr16g0517571 0.5kb downstream 0.5kb downstream 500   false HanXRQChr16: 117359787-117360286 Helianthus annuus
HanXRQChr16g0517571 1.0kb upstream 1.0kb upstream 6311   true HanXRQChr16: 117353476-117359786 Helianthus annuus
HanXRQChr16g0517571 1.0kb upstream 1.0kb upstream 1000   false HanXRQChr16: 117353476-117354475 Helianthus annuus
HanXRQChr16g0517571 1.0kb downstream 1.0kb downstream 6311   true HanXRQChr16: 117354476-117360786 Helianthus annuus
HanXRQChr16g0517571 1.0kb downstream 1.0kb downstream 1000   false HanXRQChr16: 117359787-117360786 Helianthus annuus
HanXRQChr16g0517571 2.0kb upstream 2.0kb upstream 7311   true HanXRQChr16: 117352476-117359786 Helianthus annuus
HanXRQChr16g0517571 2.0kb upstream 2.0kb upstream 2000   false HanXRQChr16: 117352476-117354475 Helianthus annuus
HanXRQChr16g0517571 2.0kb downstream 2.0kb downstream 7311   true HanXRQChr16: 117354476-117361786 Helianthus annuus
HanXRQChr16g0517571 2.0kb downstream 2.0kb downstream 2000   false HanXRQChr16: 117359787-117361786 Helianthus annuus
HanXRQChr16g0517571 5.0kb upstream 5.0kb upstream 10311   true HanXRQChr16: 117349476-117359786 Helianthus annuus
HanXRQChr16g0517571 5.0kb upstream 5.0kb upstream 5000   false HanXRQChr16: 117349476-117354475 Helianthus annuus
HanXRQChr16g0517571 5.0kb downstream 5.0kb downstream 10311   true HanXRQChr16: 117354476-117364786 Helianthus annuus
HanXRQChr16g0517571 5.0kb downstream 5.0kb downstream 5000   false HanXRQChr16: 117359787-117364786 Helianthus annuus
HanXRQChr16g0517571 10.0kb upstream 10.0kb upstream 15311   true HanXRQChr16: 117344476-117359786 Helianthus annuus
HanXRQChr16g0517571 10.0kb upstream 10.0kb upstream 10000   false HanXRQChr16: 117344476-117354475 Helianthus annuus
HanXRQChr16g0517571 10.0kb downstream 10.0kb downstream 15311   true HanXRQChr16: 117354476-117369786 Helianthus annuus
HanXRQChr16g0517571 10.0kb downstream 10.0kb downstream 10000   false HanXRQChr16: 117359787-117369786 Helianthus annuus

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782283 5273 Angiosperm View MSA
121418052 5263 Asterids Singleton cluster - no MSA
123752407 5271 Pentapetalae View MSA
122774538 5272 Eudicot View MSA
121053815 5274 Embryophyte View MSA
123093823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain