Gene : HanXRQChr17g0549121 H. annuus r1.2
Defline:  (1 of 3) PTHR33149:SF1 - PHOTOSYSTEM II D2 PROTEIN Genomic Order:  1490
Name:  ? HanXRQChr17g0549121 Secondary Identifier:  ? PAC:40326784
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Hannuus PHOTOALL-PWY Helianthus annuus pathologic  
Hannuus PWY-101 Helianthus annuus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
HanXRQChr17g0549121 0.5kb upstream 0.5kb upstream 2196   true HanXRQChr17: 59749567-59751762 Helianthus annuus
HanXRQChr17g0549121 0.5kb upstream 0.5kb upstream 500   false HanXRQChr17: 59749567-59750066 Helianthus annuus
HanXRQChr17g0549121 0.5kb downstream 0.5kb downstream 2196   true HanXRQChr17: 59750067-59752262 Helianthus annuus
HanXRQChr17g0549121 0.5kb downstream 0.5kb downstream 500   false HanXRQChr17: 59751763-59752262 Helianthus annuus
HanXRQChr17g0549121 1.0kb upstream 1.0kb upstream 2696   true HanXRQChr17: 59749067-59751762 Helianthus annuus
HanXRQChr17g0549121 1.0kb upstream 1.0kb upstream 1000   false HanXRQChr17: 59749067-59750066 Helianthus annuus
HanXRQChr17g0549121 1.0kb downstream 1.0kb downstream 2696   true HanXRQChr17: 59750067-59752762 Helianthus annuus
HanXRQChr17g0549121 1.0kb downstream 1.0kb downstream 1000   false HanXRQChr17: 59751763-59752762 Helianthus annuus
HanXRQChr17g0549121 2.0kb upstream 2.0kb upstream 3696   true HanXRQChr17: 59748067-59751762 Helianthus annuus
HanXRQChr17g0549121 2.0kb upstream 2.0kb upstream 2000   false HanXRQChr17: 59748067-59750066 Helianthus annuus
HanXRQChr17g0549121 2.0kb downstream 2.0kb downstream 3696   true HanXRQChr17: 59750067-59753762 Helianthus annuus
HanXRQChr17g0549121 2.0kb downstream 2.0kb downstream 2000   false HanXRQChr17: 59751763-59753762 Helianthus annuus
HanXRQChr17g0549121 5.0kb upstream 5.0kb upstream 6696   true HanXRQChr17: 59745067-59751762 Helianthus annuus
HanXRQChr17g0549121 5.0kb upstream 5.0kb upstream 5000   false HanXRQChr17: 59745067-59750066 Helianthus annuus
HanXRQChr17g0549121 5.0kb downstream 5.0kb downstream 6696   true HanXRQChr17: 59750067-59756762 Helianthus annuus
HanXRQChr17g0549121 5.0kb downstream 5.0kb downstream 5000   false HanXRQChr17: 59751763-59756762 Helianthus annuus
HanXRQChr17g0549121 10.0kb upstream 10.0kb upstream 11696   true HanXRQChr17: 59740067-59751762 Helianthus annuus
HanXRQChr17g0549121 10.0kb upstream 10.0kb upstream 10000   false HanXRQChr17: 59740067-59750066 Helianthus annuus
HanXRQChr17g0549121 10.0kb downstream 10.0kb downstream 11696   true HanXRQChr17: 59750067-59761762 Helianthus annuus
HanXRQChr17g0549121 10.0kb downstream 10.0kb downstream 10000   false HanXRQChr17: 59751763-59761762 Helianthus annuus

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121430418 5263 Asterids Singleton cluster - no MSA
123751197 5271 Pentapetalae View MSA
122773946 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain