Gene : Glyma.05G221200 G. max Wm82.a2.v1
Defline:  (1 of 4) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) Genomic Order:  2212
Name:  ? Glyma.05G221200 Secondary Identifier:  ? PAC:30526253
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G221200 0.5kb upstream 0.5kb upstream 12783 true Chr05: 40060336-40073118 Glycine max
Glyma.05G221200 0.5kb upstream 0.5kb upstream 500 false Chr05: 40072619-40073118 Glycine max
Glyma.05G221200 0.5kb downstream 0.5kb downstream 12783 true Chr05: 40059836-40072618 Glycine max
Glyma.05G221200 0.5kb downstream 0.5kb downstream 500 false Chr05: 40059836-40060335 Glycine max
Glyma.05G221200 1.0kb upstream 1.0kb upstream 13283 true Chr05: 40060336-40073618 Glycine max
Glyma.05G221200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 40072619-40073618 Glycine max
Glyma.05G221200 1.0kb downstream 1.0kb downstream 13283 true Chr05: 40059336-40072618 Glycine max
Glyma.05G221200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 40059336-40060335 Glycine max
Glyma.05G221200 2.0kb upstream 2.0kb upstream 14283 true Chr05: 40060336-40074618 Glycine max
Glyma.05G221200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 40072619-40074618 Glycine max
Glyma.05G221200 2.0kb downstream 2.0kb downstream 14283 true Chr05: 40058336-40072618 Glycine max
Glyma.05G221200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 40058336-40060335 Glycine max
Glyma.05G221200 5.0kb upstream 5.0kb upstream 17283 true Chr05: 40060336-40077618 Glycine max
Glyma.05G221200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 40072619-40077618 Glycine max
Glyma.05G221200 5.0kb downstream 5.0kb downstream 17283 true Chr05: 40055336-40072618 Glycine max
Glyma.05G221200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 40055336-40060335 Glycine max
Glyma.05G221200 10.0kb upstream 10.0kb upstream 22283 true Chr05: 40060336-40082618 Glycine max
Glyma.05G221200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 40072619-40082618 Glycine max
Glyma.05G221200 10.0kb downstream 10.0kb downstream 22283 true Chr05: 40050336-40072618 Glycine max
Glyma.05G221200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 40050336-40060335 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302919 5265 Fabidae View MSA
124068419 5270 Rosid View MSA
123739486 5271 Pentapetalae View MSA
122787494 5272 Eudicot View MSA
122043048 5273 Angiosperm View MSA
121343879 5274 Embryophyte View MSA
123425056 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.33266 0.0 11.982   High
cufflinks 2.10151 0.0 6.33331    
cufflinks 1.89745 0.0 5.78674    
cufflinks 2.01155 0.0 6.09489    
cufflinks 1.47413 0.0 4.66175    
cufflinks 0.269191 0.0 0.996623 Low Low
cufflinks 2.78445 0.0 8.0847    
cufflinks 1.80912 0.0 5.56092    
cufflinks 1.74189 0.0 5.38422    
cufflinks 0.516       Low
cufflinks 0.375       Low
cufflinks 1.161        
cufflinks 0.599        
cufflinks 0.961        
cufflinks 1.233        
cufflinks 1.274        
cufflinks 0.525       Low
cufflinks 1.43       High
cufflinks 1.366       High
cufflinks 0.988        
cufflinks 0.616        
cufflinks 1.077        
cufflinks 1.239        
cufflinks 0.43       Low
cufflinks 1.291        
cufflinks 0.517       Low

0 Strain