Protein Family : DSHCT domain containing protein, expressed 123425056

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  73

73 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29702.t000012 (1 of 2) K12598 - ATP-dependent RNA helicase DOB1 (MTR4, SKIV2L2) R. communis v0.1 7992   29702: 98557-106548
Cucsa.071060 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) C. sativus v1.0 21358   scaffold00737: 19315-40672
orange1.1g002184m.g (1 of 2) PF00270//PF00271//PF08148//PF13234 - DEAD/DEAH box helicase (DEAD) // Helicase conserved C-terminal domain (Helicase_C) // DSHCT (NUC185) domain (DSHCT) // rRNA-processing arch domain (rRNA_proc-arch) C. sinensis v1.1 9611   scaffold00117: 413886-423496
AT2G06990 (1 of 2) K12598 - ATP-dependent RNA helicase DOB1 (MTR4, SKIV2L2) A. thaliana TAIR10 HEN2 6139   Chr2: 2894940-2901078
Thhalv10019987m.g (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) E. salsugineum v1.0 6085   scaffold_13: 6432554-6438638
Ciclev10018695m.g (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) C. clementina v1.0 9731   scaffold_3: 41219276-41229006
Lus10027599.g (1 of 3) PF00270//PF00271//PF08148//PF13234 - DEAD/DEAH box helicase (DEAD) // Helicase conserved C-terminal domain (Helicase_C) // DSHCT (NUC185) domain (DSHCT) // rRNA-processing arch domain (rRNA_proc-arch) L. usitatissimum v1.0 6534   scaffold2: 179844-186377
Gorai.013G211300 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) G. raimondii v2.1 10799   Chr13: 52317728-52328526
estExt_Genewise1Plus.C_170059 (1 of 3) PF08148 - DSHCT (NUC185) domain (DSHCT) C. subellipsoidea C-169 v2.0 13214   scaffold_17: 369753-382966
MicpuC2.estExt_Genewise1Plus.C_30158 (1 of 2) PF00270//PF00271//PF08148//PF13234 - DEAD/DEAH box helicase (DEAD) // Helicase conserved C-terminal domain (Helicase_C) // DSHCT (NUC185) domain (DSHCT) // rRNA-processing arch domain (rRNA_proc-arch) M. pusilla CCMP1545 v3.0 2976   scaffold_3: 286006-288981
e_gw2.14.12.1 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) M. sp RCC299 v3.0 3210   Chr_14: 536534-539743
estExt_Genewise_ext.C_Chr_90003 (1 of 2) PTHR12131//PTHR12131:SF4 - ATP-DEPENDENT RNA AND DNA HELICASE O. lucimarinus v2.0 3072   Chr_9: 421298-424369
Thecc1EG039723 (1 of 2) K12598 - ATP-dependent RNA helicase DOB1 (MTR4, SKIV2L2) T. cacao v1.1 16315   scaffold_9: 22383898-22400212
Migut.J00836 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) M. guttatus v2.0 6926   scaffold_10: 4986764-4993689
Araha.14143s0004 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) A. halleri v1.1 5730   Scaffold14143: 10370-16099
Cagra.2331s0002 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) C. grandiflora v1.1 6155   Scaffold2331: 3719-9873
Glyma.05G221200 (1 of 4) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) G. max Wm82.a2.v1 12283   Chr05: 40060336-40072618
Glyma.08G027700 (1 of 4) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) G. max Wm82.a2.v1 9180   Chr08: 2210646-2219825
Brara.E03073 (1 of 4) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) B. rapa FPsc v1.3 4874   A05: 25478292-25483165
Bostr.24399s0014 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) B. stricta v1.2 6631   Scaffold24399: 455190-461820
Cre06.g289950 (1 of 2) K12598 - ATP-dependent RNA helicase DOB1 (MTR4, SKIV2L2) C. reinhardtii v5.6 HEL28 13237   chromosome_6: 6107729-6120965
Medtr8g101340 (1 of 4) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) M. truncatula Mt4.0v1 9490   chr8: 42543791-42553280
SapurV1A.0001s2510 (1 of 2) K12598 - ATP-dependent RNA helicase DOB1 (MTR4, SKIV2L2) S. purpurea v1.0 8053   chr06: 5808350-5816402
evm_27.TU.AmTr_v1.0_scaffold00025.254 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) A. trichopoda v1.0 17132   AmTr_v1.0_scaffold00025: 3698623-3715754
Traes_4BS_ED78E6E7C (1 of 10) PF00270//PF00271//PF08148//PF13234 - DEAD/DEAH box helicase (DEAD) // Helicase conserved C-terminal domain (Helicase_C) // DSHCT (NUC185) domain (DSHCT) // rRNA-processing arch domain (rRNA_proc-arch) T. aestivum v2.2 7367   ta_iwgsc_4bs_v1_4899184: 2758-10124
Traes_4DS_665ECA8D8 (1 of 10) PF00270//PF00271//PF08148//PF13234 - DEAD/DEAH box helicase (DEAD) // Helicase conserved C-terminal domain (Helicase_C) // DSHCT (NUC185) domain (DSHCT) // rRNA-processing arch domain (rRNA_proc-arch) T. aestivum v2.2 7417   ta_iwgsc_4ds_v1_1907444: 507-7923
Eucgr.C00066 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) E. grandis v2.0 10637   Chr03: 250472-261108
Prupe.1G065000 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) P. persica v2.1 10020   Pp01: 4619014-4629033
GSMUA_Achr3G05450_001 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) M. acuminata v1 10625   chr3: 3593464-3604088
Manes.18G138900 (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) M. esculenta v6.1 15602   Chromosome18: 17935727-17951328

73 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29702.m000175 R. communis v0.1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Cucsa.071060.1 C. sativus v1.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
orange1.1g002184m C. sinensis v1.1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
AT2G06990.1 A. thaliana TAIR10 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Thhalv10019987m E. salsugineum v1.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Ciclev10018695m C. clementina v1.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Lus10027599 L. usitatissimum v1.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Gorai.013G211300.1 G. raimondii v2.1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
30930 C. subellipsoidea C-169 v2.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
32119 M. pusilla CCMP1545 v3.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
88392 M. sp RCC299 v3.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
50379 O. lucimarinus v2.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Thecc1EG039723t1 T. cacao v1.1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Migut.J00836.1.p M. guttatus v2.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Araha.14143s0004.1.p A. halleri v1.1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Cagra.2331s0002.1.p C. grandiflora v1.1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Glyma.08G027700.1.p G. max Wm82.a2.v1 123425056 DSHCT domain containing protein, expressed 2 5275 Viridiplantae
Glyma.05G221200.1.p G. max Wm82.a2.v1 123425056 DSHCT domain containing protein, expressed 2 5275 Viridiplantae
Brara.E03073.1.p B. rapa FPsc v1.3 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Bostr.24399s0014.1.p B. stricta v1.2 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Cre06.g289950.t1.1 C. reinhardtii v5.6 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Medtr8g101340.1 M. truncatula Mt4.0v1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
SapurV1A.0001s2510.1.p S. purpurea v1.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
evm_27.model.AmTr_v1.0_scaffold00025.254 A. trichopoda v1.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Traes_4DS_665ECA8D8.1 T. aestivum v2.2 123425056 DSHCT domain containing protein, expressed 2 5275 Viridiplantae
Traes_4BS_ED78E6E7C.1 T. aestivum v2.2 123425056 DSHCT domain containing protein, expressed 2 5275 Viridiplantae
Eucgr.C00066.1.p E. grandis v2.0 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Prupe.1G065000.1.p P. persica v2.1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
GSMUA_Achr3P05450_001 M. acuminata v1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae
Manes.18G138900.1.p M. esculenta v6.1 123425056 DSHCT domain containing protein, expressed 1 5275 Viridiplantae