Gene : Eucgr.C00066 E. grandis v2.0
Defline:  (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) Genomic Order:  14
Name:  ? Eucgr.C00066 Secondary Identifier:  ? PAC:32037124
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C00066 0.5kb upstream 0.5kb upstream 11137 true Chr03: 250472-261608 Eucalyptus grandis
Eucgr.C00066 0.5kb upstream 0.5kb upstream 500 false Chr03: 261109-261608 Eucalyptus grandis
Eucgr.C00066 0.5kb downstream 0.5kb downstream 11137 true Chr03: 249972-261108 Eucalyptus grandis
Eucgr.C00066 0.5kb downstream 0.5kb downstream 500 false Chr03: 249972-250471 Eucalyptus grandis
Eucgr.C00066 1.0kb upstream 1.0kb upstream 11637 true Chr03: 250472-262108 Eucalyptus grandis
Eucgr.C00066 1.0kb upstream 1.0kb upstream 1000 false Chr03: 261109-262108 Eucalyptus grandis
Eucgr.C00066 1.0kb downstream 1.0kb downstream 11637 true Chr03: 249472-261108 Eucalyptus grandis
Eucgr.C00066 1.0kb downstream 1.0kb downstream 1000 false Chr03: 249472-250471 Eucalyptus grandis
Eucgr.C00066 2.0kb upstream 2.0kb upstream 12637 true Chr03: 250472-263108 Eucalyptus grandis
Eucgr.C00066 2.0kb upstream 2.0kb upstream 2000 false Chr03: 261109-263108 Eucalyptus grandis
Eucgr.C00066 2.0kb downstream 2.0kb downstream 12637 true Chr03: 248472-261108 Eucalyptus grandis
Eucgr.C00066 2.0kb downstream 2.0kb downstream 2000 false Chr03: 248472-250471 Eucalyptus grandis
Eucgr.C00066 5.0kb upstream 5.0kb upstream 15637 true Chr03: 250472-266108 Eucalyptus grandis
Eucgr.C00066 5.0kb upstream 5.0kb upstream 5000 false Chr03: 261109-266108 Eucalyptus grandis
Eucgr.C00066 5.0kb downstream 5.0kb downstream 15637 true Chr03: 245472-261108 Eucalyptus grandis
Eucgr.C00066 5.0kb downstream 5.0kb downstream 5000 false Chr03: 245472-250471 Eucalyptus grandis
Eucgr.C00066 10.0kb upstream 10.0kb upstream 20637 true Chr03: 250472-271108 Eucalyptus grandis
Eucgr.C00066 10.0kb upstream 10.0kb upstream 10000 false Chr03: 261109-271108 Eucalyptus grandis
Eucgr.C00066 10.0kb downstream 10.0kb downstream 20637 true Chr03: 240472-261108 Eucalyptus grandis
Eucgr.C00066 10.0kb downstream 10.0kb downstream 10000 false Chr03: 240472-250471 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068419 5270 Rosid View MSA
123739486 5271 Pentapetalae View MSA
122787494 5272 Eudicot View MSA
122043048 5273 Angiosperm View MSA
121343879 5274 Embryophyte View MSA
123425056 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.35086 0.0 18.6165    
cufflinks 5.2822 0.0 11.9767   Low
cufflinks 7.86475 0.0 17.5298    
cufflinks 5.63743 0.0 12.7085    
cufflinks 5.38723 0.0 12.2257    
cufflinks 9.12754 0.0 20.3351   High

0 Strain