Gene : Glyma.06G049000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24012:SF478 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MJH23 Genomic Order:  490
Name:  ? Glyma.06G049000 Secondary Identifier:  ? PAC:30554235
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G049000 0.5kb upstream 0.5kb upstream 3028 true Chr06: 3676415-3679442 Glycine max
Glyma.06G049000 0.5kb upstream 0.5kb upstream 500 false Chr06: 3676415-3676914 Glycine max
Glyma.06G049000 0.5kb downstream 0.5kb downstream 3028 true Chr06: 3676915-3679942 Glycine max
Glyma.06G049000 0.5kb downstream 0.5kb downstream 500 false Chr06: 3679443-3679942 Glycine max
Glyma.06G049000 1.0kb upstream 1.0kb upstream 3528 true Chr06: 3675915-3679442 Glycine max
Glyma.06G049000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 3675915-3676914 Glycine max
Glyma.06G049000 1.0kb downstream 1.0kb downstream 3528 true Chr06: 3676915-3680442 Glycine max
Glyma.06G049000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 3679443-3680442 Glycine max
Glyma.06G049000 2.0kb upstream 2.0kb upstream 4528 true Chr06: 3674915-3679442 Glycine max
Glyma.06G049000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 3674915-3676914 Glycine max
Glyma.06G049000 2.0kb downstream 2.0kb downstream 4528 true Chr06: 3676915-3681442 Glycine max
Glyma.06G049000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 3679443-3681442 Glycine max
Glyma.06G049000 5.0kb upstream 5.0kb upstream 7528 true Chr06: 3671915-3679442 Glycine max
Glyma.06G049000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 3671915-3676914 Glycine max
Glyma.06G049000 5.0kb downstream 5.0kb downstream 7528 true Chr06: 3676915-3684442 Glycine max
Glyma.06G049000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 3679443-3684442 Glycine max
Glyma.06G049000 10.0kb upstream 10.0kb upstream 12528 true Chr06: 3666915-3679442 Glycine max
Glyma.06G049000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 3666915-3676914 Glycine max
Glyma.06G049000 10.0kb downstream 10.0kb downstream 12528 true Chr06: 3676915-3689442 Glycine max
Glyma.06G049000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 3679443-3689442 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301715 5265 Fabidae View MSA
124072663 5270 Rosid View MSA
123742464 5271 Pentapetalae View MSA
122794211 5272 Eudicot View MSA
122048542 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351304 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.89362 0.0 27.0652    
cufflinks 10.3077 0.0 37.9045   High
cufflinks 6.83203 0.0 26.7472    
cufflinks 5.60169 0.0 19.8622    
cufflinks 5.64861 0.0 23.1829    
cufflinks 5.13991 0.0 21.576   Low
cufflinks 7.7847 0.0 29.7516    
cufflinks 5.49217 0.0 23.1371    
cufflinks 7.59711 0.0 29.2085    
cufflinks 2.061        
cufflinks 1.464       Low
cufflinks 3.889        
cufflinks 2.432        
cufflinks 2.889        
cufflinks 2.326        
cufflinks 4.459        
cufflinks 1.751        
cufflinks 4.05        
cufflinks 5.913       High
cufflinks 4.281        
cufflinks 1.145       Low
cufflinks 4.759       High
cufflinks 5.368       High
cufflinks 1.789        
cufflinks 4.229        
cufflinks 1.638       Low

0 Strain