Gene : Glyma.06G110400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11544//PTHR11544:SF57 - COLD SHOCK DOMAIN CONTAINING PROTEINS Genomic Order:  1104
Name:  ? Glyma.06G110400 Secondary Identifier:  ? PAC:30550521
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G110400 0.5kb upstream 0.5kb upstream 1486 true Chr06: 8928188-8929673 Glycine max
Glyma.06G110400 0.5kb upstream 0.5kb upstream 500 false Chr06: 8929174-8929673 Glycine max
Glyma.06G110400 0.5kb downstream 0.5kb downstream 1486 true Chr06: 8927688-8929173 Glycine max
Glyma.06G110400 0.5kb downstream 0.5kb downstream 500 false Chr06: 8927688-8928187 Glycine max
Glyma.06G110400 1.0kb upstream 1.0kb upstream 1986 true Chr06: 8928188-8930173 Glycine max
Glyma.06G110400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 8929174-8930173 Glycine max
Glyma.06G110400 1.0kb downstream 1.0kb downstream 1986 true Chr06: 8927188-8929173 Glycine max
Glyma.06G110400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 8927188-8928187 Glycine max
Glyma.06G110400 2.0kb upstream 2.0kb upstream 2986 true Chr06: 8928188-8931173 Glycine max
Glyma.06G110400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 8929174-8931173 Glycine max
Glyma.06G110400 2.0kb downstream 2.0kb downstream 2986 true Chr06: 8926188-8929173 Glycine max
Glyma.06G110400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 8926188-8928187 Glycine max
Glyma.06G110400 5.0kb upstream 5.0kb upstream 5986 true Chr06: 8928188-8934173 Glycine max
Glyma.06G110400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 8929174-8934173 Glycine max
Glyma.06G110400 5.0kb downstream 5.0kb downstream 5986 true Chr06: 8923188-8929173 Glycine max
Glyma.06G110400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 8923188-8928187 Glycine max
Glyma.06G110400 10.0kb upstream 10.0kb upstream 10986 true Chr06: 8928188-8939173 Glycine max
Glyma.06G110400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 8929174-8939173 Glycine max
Glyma.06G110400 10.0kb downstream 10.0kb downstream 10986 true Chr06: 8918188-8929173 Glycine max
Glyma.06G110400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 8918188-8928187 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254773 5265 Fabidae View MSA
124063967 5270 Rosid View MSA
123747748 5271 Pentapetalae View MSA
122791026 5272 Eudicot View MSA
122042982 5273 Angiosperm View MSA
121347174 5274 Embryophyte View MSA
123428407 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.12342 0.0 24.0861    
cufflinks 11.2148 0.0 32.1003   High
cufflinks 9.20354 0.0 27.0514    
cufflinks 9.78336 0.0 28.4524    
cufflinks 7.01511 0.0 21.1464    
cufflinks 8.83311 0.0 25.9089    
cufflinks 3.58265 0.0 11.8839   Low
cufflinks 4.40987 0.0 14.3417   Low
cufflinks 9.00257 0.0 26.3702    
cufflinks 7.439        
cufflinks 5.003        
cufflinks 9.445     High  
cufflinks 5.096        
cufflinks 9.233     High  
cufflinks 3.378        
cufflinks 40.457     High High
cufflinks 2.59       Low
cufflinks 12.099     High  
cufflinks 8.688     High  
cufflinks 59.735     High High
cufflinks 3.831        
cufflinks 39.412     High High
cufflinks 26.583     High  
cufflinks 2.538       Low
cufflinks 54.438     High High
cufflinks 4.109        

0 Strain