Gene : Glyma.06G153900 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR31339:SF4 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN Genomic Order:  1539
Name:  ? Glyma.06G153900 Secondary Identifier:  ? PAC:30549671
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G153900 0.5kb upstream 0.5kb upstream 4738 true Chr06: 12545457-12550194 Glycine max
Glyma.06G153900 0.5kb upstream 0.5kb upstream 500 false Chr06: 12549695-12550194 Glycine max
Glyma.06G153900 0.5kb downstream 0.5kb downstream 4738 true Chr06: 12544957-12549694 Glycine max
Glyma.06G153900 0.5kb downstream 0.5kb downstream 500 false Chr06: 12544957-12545456 Glycine max
Glyma.06G153900 1.0kb upstream 1.0kb upstream 5238 true Chr06: 12545457-12550694 Glycine max
Glyma.06G153900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 12549695-12550694 Glycine max
Glyma.06G153900 1.0kb downstream 1.0kb downstream 5238 true Chr06: 12544457-12549694 Glycine max
Glyma.06G153900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 12544457-12545456 Glycine max
Glyma.06G153900 2.0kb upstream 2.0kb upstream 6238 true Chr06: 12545457-12551694 Glycine max
Glyma.06G153900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 12549695-12551694 Glycine max
Glyma.06G153900 2.0kb downstream 2.0kb downstream 6238 true Chr06: 12543457-12549694 Glycine max
Glyma.06G153900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 12543457-12545456 Glycine max
Glyma.06G153900 5.0kb upstream 5.0kb upstream 9238 true Chr06: 12545457-12554694 Glycine max
Glyma.06G153900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 12549695-12554694 Glycine max
Glyma.06G153900 5.0kb downstream 5.0kb downstream 9238 true Chr06: 12540457-12549694 Glycine max
Glyma.06G153900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 12540457-12545456 Glycine max
Glyma.06G153900 10.0kb upstream 10.0kb upstream 14238 true Chr06: 12545457-12559694 Glycine max
Glyma.06G153900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 12549695-12559694 Glycine max
Glyma.06G153900 10.0kb downstream 10.0kb downstream 14238 true Chr06: 12535457-12549694 Glycine max
Glyma.06G153900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 12535457-12545456 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304901 5265 Fabidae View MSA
124065393 5270 Rosid View MSA
123744386 5271 Pentapetalae View MSA
122790869 5272 Eudicot View MSA
122045160 5273 Angiosperm View MSA
121348435 5274 Embryophyte View MSA
123380865 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.02574 0.0 19.3469    
cufflinks 0.867057 0.0 3.76537   Low
cufflinks 4.68114 0.0 18.3755    
cufflinks 1.74241 0.0 6.23296    
cufflinks 2.69956 0.0 10.5462    
cufflinks 8.83056 0.0 30.4571   High
cufflinks 2.48946 0.0 10.0575    
cufflinks 2.63791 0.0 8.20292    
cufflinks 2.76245 0.0 10.7537    
cufflinks 0.32        
cufflinks 2.191        
cufflinks 1.112        
cufflinks 1.151        
cufflinks 1.092        
cufflinks 1.461        
cufflinks 0.152       Low
cufflinks 5.686       High
cufflinks 0.658        
cufflinks 0.306        
cufflinks 0.136       Low
cufflinks 2.027        
cufflinks 0.263        
cufflinks 0.476        
cufflinks 2.166        
cufflinks 0.125       Low
cufflinks 2.978       High

0 Strain