Gene : Glyma.07G048500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12802:SF43 - PROTEIN CCA1-RELATED Genomic Order:  485
Name:  ? Glyma.07G048500 Secondary Identifier:  ? PAC:30493423
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.07G048500 0.5kb upstream 0.5kb upstream 11707 true Chr07: 4102968-4114674 Glycine max
Glyma.07G048500 0.5kb upstream 0.5kb upstream 500 false Chr07: 4114175-4114674 Glycine max
Glyma.07G048500 0.5kb downstream 0.5kb downstream 11707 true Chr07: 4102468-4114174 Glycine max
Glyma.07G048500 0.5kb downstream 0.5kb downstream 500 false Chr07: 4102468-4102967 Glycine max
Glyma.07G048500 1.0kb upstream 1.0kb upstream 12207 true Chr07: 4102968-4115174 Glycine max
Glyma.07G048500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4114175-4115174 Glycine max
Glyma.07G048500 1.0kb downstream 1.0kb downstream 12207 true Chr07: 4101968-4114174 Glycine max
Glyma.07G048500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4101968-4102967 Glycine max
Glyma.07G048500 2.0kb upstream 2.0kb upstream 13207 true Chr07: 4102968-4116174 Glycine max
Glyma.07G048500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4114175-4116174 Glycine max
Glyma.07G048500 2.0kb downstream 2.0kb downstream 13207 true Chr07: 4100968-4114174 Glycine max
Glyma.07G048500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4100968-4102967 Glycine max
Glyma.07G048500 5.0kb upstream 5.0kb upstream 16207 true Chr07: 4102968-4119174 Glycine max
Glyma.07G048500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4114175-4119174 Glycine max
Glyma.07G048500 5.0kb downstream 5.0kb downstream 16207 true Chr07: 4097968-4114174 Glycine max
Glyma.07G048500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4097968-4102967 Glycine max
Glyma.07G048500 10.0kb upstream 10.0kb upstream 21207 true Chr07: 4102968-4124174 Glycine max
Glyma.07G048500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4114175-4124174 Glycine max
Glyma.07G048500 10.0kb downstream 10.0kb downstream 21207 true Chr07: 4092968-4114174 Glycine max
Glyma.07G048500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4092968-4102967 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311594 5265 Fabidae View MSA
124066959 5270 Rosid View MSA
123746755 5271 Pentapetalae View MSA
122793236 5272 Eudicot View MSA
122048982 5273 Angiosperm View MSA
121350117 5274 Embryophyte View MSA
123427162 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.7504 0.0 469.975 High High
cufflinks 18.7463 0.0 99.8248    
cufflinks 10.5607 0.0 50.0558    
cufflinks 9.99366 0.0 52.1007    
cufflinks 4.71461 0.0 24.5706    
cufflinks 7.80283 0.0 32.456    
cufflinks 5.44434 0.0 25.4329    
cufflinks 10.9857 0.0 49.0324    
cufflinks 3.99701 0.0 16.8327   Low
cufflinks 1.428        
cufflinks 0.149       Low
cufflinks 0.456        
cufflinks 0.474        
cufflinks 0.261        
cufflinks 0.239       Low
cufflinks 3.551       High
cufflinks 0.208       Low
cufflinks 0.675        
cufflinks 2.026        
cufflinks 1.626        
cufflinks 0.32        
cufflinks 2.623       High
cufflinks 2.744       High
cufflinks 0.285        
cufflinks 2.927       High
cufflinks 0.662        

0 Strain