Gene : Glyma.08G086500 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  865
Name:  ? Glyma.08G086500 Secondary Identifier:  ? PAC:30538276
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G086500 0.5kb upstream 0.5kb upstream 2525 true Chr08: 6545780-6548304 Glycine max
Glyma.08G086500 0.5kb upstream 0.5kb upstream 500 false Chr08: 6547805-6548304 Glycine max
Glyma.08G086500 0.5kb downstream 0.5kb downstream 2525 true Chr08: 6545280-6547804 Glycine max
Glyma.08G086500 0.5kb downstream 0.5kb downstream 500 false Chr08: 6545280-6545779 Glycine max
Glyma.08G086500 1.0kb upstream 1.0kb upstream 3025 true Chr08: 6545780-6548804 Glycine max
Glyma.08G086500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 6547805-6548804 Glycine max
Glyma.08G086500 1.0kb downstream 1.0kb downstream 3025 true Chr08: 6544780-6547804 Glycine max
Glyma.08G086500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 6544780-6545779 Glycine max
Glyma.08G086500 2.0kb upstream 2.0kb upstream 4025 true Chr08: 6545780-6549804 Glycine max
Glyma.08G086500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 6547805-6549804 Glycine max
Glyma.08G086500 2.0kb downstream 2.0kb downstream 4025 true Chr08: 6543780-6547804 Glycine max
Glyma.08G086500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 6543780-6545779 Glycine max
Glyma.08G086500 5.0kb upstream 5.0kb upstream 7025 true Chr08: 6545780-6552804 Glycine max
Glyma.08G086500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 6547805-6552804 Glycine max
Glyma.08G086500 5.0kb downstream 5.0kb downstream 7025 true Chr08: 6540780-6547804 Glycine max
Glyma.08G086500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 6540780-6545779 Glycine max
Glyma.08G086500 10.0kb upstream 10.0kb upstream 12025 true Chr08: 6545780-6557804 Glycine max
Glyma.08G086500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 6547805-6557804 Glycine max
Glyma.08G086500 10.0kb downstream 10.0kb downstream 12025 true Chr08: 6535780-6547804 Glycine max
Glyma.08G086500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 6535780-6545779 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026268 5273 Angiosperm View MSA
122302266 5265 Fabidae View MSA
124063254 5270 Rosid View MSA
123739998 5271 Pentapetalae View MSA
122787628 5272 Eudicot View MSA
121296253 5274 Embryophyte View MSA
123334450 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.57543 0.0 7.87316   High
cufflinks 1.59455 0.0 5.21291    
cufflinks 1.16319 0.0 3.94186    
cufflinks 0.936327 0.0 3.2544   Low
cufflinks 1.58282 0.0 5.18991    
cufflinks 1.03391 0.0 3.56208    
cufflinks 2.13799 0.0 6.71975   High
cufflinks 0.825991 0.0 2.89928   Low
cufflinks 1.57788 0.0 5.16301    
cufflinks 0.911        
cufflinks 0.58       Low
cufflinks 1.902        
cufflinks 2.17        
cufflinks 4.021       High
cufflinks 0.834        
cufflinks 1.331        
cufflinks 1.406        
cufflinks 1.858        
cufflinks 1.895        
cufflinks 1.195        
cufflinks 0.692       Low
cufflinks 1.384        
cufflinks 2.015        
cufflinks 0.814        
cufflinks 1.821        
cufflinks 0.661       Low

0 Strain