Gene : Glyma.08G281300 G. max Wm82.a2.v1
Defline:  (1 of 4) PF00421 - Photosystem II protein (PSII) Genomic Order:  2813
Name:  ? Glyma.08G281300 Secondary Identifier:  ? PAC:30541250
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G281300 0.5kb upstream 0.5kb upstream 916 true Chr08: 38323910-38324825 Glycine max
Glyma.08G281300 0.5kb upstream 0.5kb upstream 500 false Chr08: 38323910-38324409 Glycine max
Glyma.08G281300 0.5kb downstream 0.5kb downstream 916 true Chr08: 38324410-38325325 Glycine max
Glyma.08G281300 0.5kb downstream 0.5kb downstream 500 false Chr08: 38324826-38325325 Glycine max
Glyma.08G281300 1.0kb upstream 1.0kb upstream 1416 true Chr08: 38323410-38324825 Glycine max
Glyma.08G281300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 38323410-38324409 Glycine max
Glyma.08G281300 1.0kb downstream 1.0kb downstream 1416 true Chr08: 38324410-38325825 Glycine max
Glyma.08G281300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 38324826-38325825 Glycine max
Glyma.08G281300 2.0kb upstream 2.0kb upstream 2416 true Chr08: 38322410-38324825 Glycine max
Glyma.08G281300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 38322410-38324409 Glycine max
Glyma.08G281300 2.0kb downstream 2.0kb downstream 2416 true Chr08: 38324410-38326825 Glycine max
Glyma.08G281300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 38324826-38326825 Glycine max
Glyma.08G281300 5.0kb upstream 5.0kb upstream 5416 true Chr08: 38319410-38324825 Glycine max
Glyma.08G281300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 38319410-38324409 Glycine max
Glyma.08G281300 5.0kb downstream 5.0kb downstream 5416 true Chr08: 38324410-38329825 Glycine max
Glyma.08G281300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 38324826-38329825 Glycine max
Glyma.08G281300 10.0kb upstream 10.0kb upstream 10416 true Chr08: 38314410-38324825 Glycine max
Glyma.08G281300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 38314410-38324409 Glycine max
Glyma.08G281300 10.0kb downstream 10.0kb downstream 10416 true Chr08: 38324410-38334825 Glycine max
Glyma.08G281300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 38324826-38334825 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248438 5265 Fabidae Singleton cluster - no MSA
124051318 5270 Rosid View MSA
123753691 5271 Pentapetalae View MSA
122787525 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.69428 0.0 31.2518   High
cufflinks 1.00801 0.0 3.99733    
cufflinks 1.04846 0.0 4.14912    
cufflinks 25.7455 0.0 81.959 High High
cufflinks 0.210055 0.0 0.907002 Low Low
cufflinks 0.7312 0.0 2.93536    
cufflinks 5.49984 0.0 20.2253    
cufflinks 0.736081 0.0 2.94769    
cufflinks 0.123678 0.0 0.559395 Low Low
cufflinks 5.221       High
cufflinks 0.048     Low Low
cufflinks 1.698        
cufflinks 0.645        
cufflinks 0.204        
cufflinks 0.184        
cufflinks 2.521        
cufflinks 0.643        
cufflinks 1.925        
cufflinks 2.469        
cufflinks 4.414        
cufflinks 0.211        
cufflinks 4.266        
cufflinks 12.871     High High
cufflinks 0.141       Low
cufflinks 4.912        
cufflinks 0.075       Low

0 Strain