Gene : Glyma.09G088500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24423:SF563 - PHYTOCHROME E Genomic Order:  885
Name:  ? Glyma.09G088500 Secondary Identifier:  ? PAC:30482726
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G088500 0.5kb upstream 0.5kb upstream 6858 true Chr09: 11694097-11700954 Glycine max
Glyma.09G088500 0.5kb upstream 0.5kb upstream 500 false Chr09: 11694097-11694596 Glycine max
Glyma.09G088500 0.5kb downstream 0.5kb downstream 6858 true Chr09: 11694597-11701454 Glycine max
Glyma.09G088500 0.5kb downstream 0.5kb downstream 500 false Chr09: 11700955-11701454 Glycine max
Glyma.09G088500 1.0kb upstream 1.0kb upstream 7358 true Chr09: 11693597-11700954 Glycine max
Glyma.09G088500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 11693597-11694596 Glycine max
Glyma.09G088500 1.0kb downstream 1.0kb downstream 7358 true Chr09: 11694597-11701954 Glycine max
Glyma.09G088500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 11700955-11701954 Glycine max
Glyma.09G088500 2.0kb upstream 2.0kb upstream 8358 true Chr09: 11692597-11700954 Glycine max
Glyma.09G088500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 11692597-11694596 Glycine max
Glyma.09G088500 2.0kb downstream 2.0kb downstream 8358 true Chr09: 11694597-11702954 Glycine max
Glyma.09G088500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 11700955-11702954 Glycine max
Glyma.09G088500 5.0kb upstream 5.0kb upstream 11358 true Chr09: 11689597-11700954 Glycine max
Glyma.09G088500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 11689597-11694596 Glycine max
Glyma.09G088500 5.0kb downstream 5.0kb downstream 11358 true Chr09: 11694597-11705954 Glycine max
Glyma.09G088500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 11700955-11705954 Glycine max
Glyma.09G088500 10.0kb upstream 10.0kb upstream 16358 true Chr09: 11684597-11700954 Glycine max
Glyma.09G088500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 11684597-11694596 Glycine max
Glyma.09G088500 10.0kb downstream 10.0kb downstream 16358 true Chr09: 11694597-11710954 Glycine max
Glyma.09G088500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 11700955-11710954 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301285 5265 Fabidae View MSA
124060770 5270 Rosid View MSA
123740006 5271 Pentapetalae View MSA
122797861 5272 Eudicot View MSA
122046644 5273 Angiosperm View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.37245 0.0 5.30948    
cufflinks 2.29494 0.0 8.90779   High
cufflinks 0.865803 0.0 3.81219    
cufflinks 2.42829 0.0 9.37031   High
cufflinks 0.674117 0.0 2.46514    
cufflinks 0.310482 0.0 1.84163   Low
cufflinks 1.00249 0.0 4.32564    
cufflinks 1.39265 0.0 5.3675    
cufflinks 0.360223 0.0 1.56647   Low
cufflinks 0.881        
cufflinks 0.035     Low Low
cufflinks 0.616        
cufflinks 0.29        
cufflinks 0.263        
cufflinks 0.03     Low Low
cufflinks 1.038        
cufflinks 0.08        
cufflinks 0.992        
cufflinks 0.971        
cufflinks 0.91        
cufflinks 0.053     Low Low
cufflinks 1.29       High
cufflinks 0.888        
cufflinks 0.061       Low
cufflinks 1.114        
cufflinks 0.067       Low

0 Strain