Gene : Glyma.10G057300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Genomic Order:  573
Name:  ? Glyma.10G057300 Secondary Identifier:  ? PAC:30474812
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G057300 0.5kb upstream 0.5kb upstream 5968 true Chr10: 5229747-5235714 Glycine max
Glyma.10G057300 0.5kb upstream 0.5kb upstream 500 false Chr10: 5235215-5235714 Glycine max
Glyma.10G057300 0.5kb downstream 0.5kb downstream 5968 true Chr10: 5229247-5235214 Glycine max
Glyma.10G057300 0.5kb downstream 0.5kb downstream 500 false Chr10: 5229247-5229746 Glycine max
Glyma.10G057300 1.0kb upstream 1.0kb upstream 6468 true Chr10: 5229747-5236214 Glycine max
Glyma.10G057300 1.0kb upstream 1.0kb upstream 1000 false Chr10: 5235215-5236214 Glycine max
Glyma.10G057300 1.0kb downstream 1.0kb downstream 6468 true Chr10: 5228747-5235214 Glycine max
Glyma.10G057300 1.0kb downstream 1.0kb downstream 1000 false Chr10: 5228747-5229746 Glycine max
Glyma.10G057300 2.0kb upstream 2.0kb upstream 7468 true Chr10: 5229747-5237214 Glycine max
Glyma.10G057300 2.0kb upstream 2.0kb upstream 2000 false Chr10: 5235215-5237214 Glycine max
Glyma.10G057300 2.0kb downstream 2.0kb downstream 7468 true Chr10: 5227747-5235214 Glycine max
Glyma.10G057300 2.0kb downstream 2.0kb downstream 2000 false Chr10: 5227747-5229746 Glycine max
Glyma.10G057300 5.0kb upstream 5.0kb upstream 10468 true Chr10: 5229747-5240214 Glycine max
Glyma.10G057300 5.0kb upstream 5.0kb upstream 5000 false Chr10: 5235215-5240214 Glycine max
Glyma.10G057300 5.0kb downstream 5.0kb downstream 10468 true Chr10: 5224747-5235214 Glycine max
Glyma.10G057300 5.0kb downstream 5.0kb downstream 5000 false Chr10: 5224747-5229746 Glycine max
Glyma.10G057300 10.0kb upstream 10.0kb upstream 15468 true Chr10: 5229747-5245214 Glycine max
Glyma.10G057300 10.0kb upstream 10.0kb upstream 10000 false Chr10: 5235215-5245214 Glycine max
Glyma.10G057300 10.0kb downstream 10.0kb downstream 15468 true Chr10: 5219747-5235214 Glycine max
Glyma.10G057300 10.0kb downstream 10.0kb downstream 10000 false Chr10: 5219747-5229746 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311038 5265 Fabidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.8045 0.0 36.8391   High
cufflinks 9.992 0.0 26.7343   High
cufflinks 3.1582 0.0 9.23674    
cufflinks 3.88697 0.0 11.1041    
cufflinks 2.22955 0.0 6.88496    
cufflinks 1.92756 0.0 6.07126    
cufflinks 3.74481 0.0 10.7977    
cufflinks 3.0318 0.0 8.93228    
cufflinks 1.41732 0.0 4.65492   Low
cufflinks 2.404        
cufflinks 0.313       Low
cufflinks 2.05        
cufflinks 0.637        
cufflinks 0.56        
cufflinks 0.436        
cufflinks 11.616     High High
cufflinks 0.207       Low
cufflinks 2.318        
cufflinks 3.983        
cufflinks 14.393     High High
cufflinks 0.36        
cufflinks 13.458     High High
cufflinks 12.046     High High
cufflinks 0.353        
cufflinks 12.331     High High
cufflinks 0.234       Low

0 Strain