Protein Family : RNApolymerase sigma subunit 2 123428711

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  303

303 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29794.t000067 (1 of 1) PTHR30603//PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGC R. communis v0.1 3978   29794: 374390-378367
29864.t000020 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC R. communis v0.1 2106   29864: 286359-288464
30078.t000100 (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC R. communis v0.1 3570   30078: 633727-637296
30148.t000011 (1 of 1) PF00140//PF04539//PF04542//PF04545 - Sigma-70 factor, region 1.2 (Sigma70_r1_2) // Sigma-70 region 3 (Sigma70_r3) // Sigma-70 region 2 (Sigma70_r2) // Sigma-70, region 4 (Sigma70_r4) R. communis v0.1 4863   30148: 70537-75399
Cucsa.362600 (1 of 1) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO C. sativus v1.0 4653   scaffold03611: 407567-412219
Cucsa.124610 (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC C. sativus v1.0 4969   scaffold01001: 488333-493301
Cucsa.160980 (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC C. sativus v1.0 2436   scaffold01144: 1051714-1054149
Cucsa.248920 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. sativus v1.0 3281   scaffold02208: 104273-107553
orange1.1g008352m.g (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC C. sinensis v1.1 4833   scaffold00283: 208308-213140
orange1.1g046578m.g (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. sinensis v1.1 1878   scaffold00003: 4002653-4004530
orange1.1g009449m.g (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC C. sinensis v1.1 3828   scaffold00005: 1310765-1314592
orange1.1g007404m.g (1 of 7) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO C. sinensis v1.1 4562   scaffold00238: 98595-103156
AT5G13730 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. thaliana TAIR10 SIG4 1728   Chr5: 4429110-4430837
AT3G53920 (1 of 1) PTHR30603//PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGC A. thaliana TAIR10 SIGC 3081   Chr3: 19960869-19963949
AT1G08540 (1 of 6) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO A. thaliana TAIR10 SIG2 3510   Chr1: 2703336-2706845
AT2G36990 (1 of 6) PF04539 - Sigma-70 region 3 (Sigma70_r3) A. thaliana TAIR10 SIGF 2882   Chr2: 15537258-15540139
Thhalv10016472m.g (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC E. salsugineum v1.0 3120   scaffold_10: 8989105-8992224
Thhalv10010251m.g (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC E. salsugineum v1.0 2990   scaffold_16: 921494-924483
Thhalv10013654m.g (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC E. salsugineum v1.0 1822   scaffold_2: 4495465-4497286
Thhalv10007187m.g (1 of 1) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO E. salsugineum v1.0 3279   scaffold_5: 12884535-12887813
Ciclev10011376m.g (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC C. clementina v1.0 5033   scaffold_6: 9681477-9686509
Ciclev10007968m.g (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC C. clementina v1.0 3811   scaffold_1: 3567764-3571574
Ciclev10033747m.g (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. clementina v1.0 1926   scaffold_4: 24944130-24946055
Ciclev10030998m.g (1 of 7) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO C. clementina v1.0 4569   scaffold_4: 17143350-17147918
Lus10001339.g (1 of 2) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO L. usitatissimum v1.0 2713   scaffold2292: 76950-79662
Lus10013642.g (1 of 2) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO L. usitatissimum v1.0 2769   scaffold317: 226456-229224
Lus10020325.g (1 of 10) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO L. usitatissimum v1.0 2908   scaffold641: 404486-407393
Lus10005668.g (1 of 10) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO L. usitatissimum v1.0 2463   scaffold911: 57435-59897
Gorai.004G253700 (1 of 2) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO G. raimondii v2.1 4953   Chr04: 59086377-59091329
Gorai.009G415400 (1 of 2) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC G. raimondii v2.1 3539   Chr09: 63898063-63901601

303 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
30148.m001412 R. communis v0.1 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
30078.m002307 R. communis v0.1 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
29864.m001444 R. communis v0.1 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
29794.m003368 R. communis v0.1 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Cucsa.248920.1 C. sativus v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Cucsa.362600.1 C. sativus v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Cucsa.124610.1 C. sativus v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Cucsa.160980.1 C. sativus v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
orange1.1g007404m C. sinensis v1.1 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
orange1.1g008352m C. sinensis v1.1 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
orange1.1g046578m C. sinensis v1.1 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
orange1.1g009449m C. sinensis v1.1 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
AT1G08540.1 A. thaliana TAIR10 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
AT5G13730.1 A. thaliana TAIR10 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
AT3G53920.1 A. thaliana TAIR10 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
AT2G36990.1 A. thaliana TAIR10 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Thhalv10016472m E. salsugineum v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Thhalv10007187m E. salsugineum v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Thhalv10010251m E. salsugineum v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Thhalv10013654m E. salsugineum v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Ciclev10030998m C. clementina v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Ciclev10033747m C. clementina v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Ciclev10011376m C. clementina v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Ciclev10007968m C. clementina v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Lus10005668 L. usitatissimum v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Lus10001339 L. usitatissimum v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Lus10013642 L. usitatissimum v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Lus10020325 L. usitatissimum v1.0 123428711 RNApolymerase sigma subunit 2 4 5275 Viridiplantae
Gorai.006G165200.1 G. raimondii v2.1 123428711 RNApolymerase sigma subunit 2 5 5275 Viridiplantae
Gorai.007G347300.1 G. raimondii v2.1 123428711 RNApolymerase sigma subunit 2 5 5275 Viridiplantae