Gene : SIG2 A. thaliana TAIR10
Primary Identifier:  ? AT1G08540 Defline:  (1 of 6) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO
Genomic Order:  804 Name:  ? AT1G08540
Secondary Identifier:  ? PAC:19651009
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7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08540 0.5kb upstream 0.5kb upstream 4010 true Chr1: 2702836-2706845 Arabidopsis thaliana
AT1G08540 0.5kb upstream 0.5kb upstream 500 false Chr1: 2702836-2703335 Arabidopsis thaliana
AT1G08540 0.5kb downstream 0.5kb downstream 4010 true Chr1: 2703336-2707345 Arabidopsis thaliana
AT1G08540 0.5kb downstream 0.5kb downstream 500 false Chr1: 2706846-2707345 Arabidopsis thaliana
AT1G08540 1.0kb upstream 1.0kb upstream 4510 true Chr1: 2702336-2706845 Arabidopsis thaliana
AT1G08540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2702336-2703335 Arabidopsis thaliana
AT1G08540 1.0kb downstream 1.0kb downstream 4510 true Chr1: 2703336-2707845 Arabidopsis thaliana
AT1G08540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2706846-2707845 Arabidopsis thaliana
AT1G08540 2.0kb upstream 2.0kb upstream 5510 true Chr1: 2701336-2706845 Arabidopsis thaliana
AT1G08540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2701336-2703335 Arabidopsis thaliana
AT1G08540 2.0kb downstream 2.0kb downstream 5510 true Chr1: 2703336-2708845 Arabidopsis thaliana
AT1G08540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2706846-2708845 Arabidopsis thaliana
AT1G08540 5.0kb upstream 5.0kb upstream 8510 true Chr1: 2698336-2706845 Arabidopsis thaliana
AT1G08540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2698336-2703335 Arabidopsis thaliana
AT1G08540 5.0kb downstream 5.0kb downstream 8510 true Chr1: 2703336-2711845 Arabidopsis thaliana
AT1G08540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2706846-2711845 Arabidopsis thaliana
AT1G08540 10.0kb upstream 10.0kb upstream 13510 true Chr1: 2693336-2706845 Arabidopsis thaliana
AT1G08540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2693336-2703335 Arabidopsis thaliana
AT1G08540 10.0kb downstream 10.0kb downstream 13510 true Chr1: 2703336-2716845 Arabidopsis thaliana
AT1G08540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2706846-2716845 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373414 5261 Brassicaceae View MSA
123827684 5264 Brassicales-Malvales View MSA
124338334 5266 SBM View MSA
124251670 5268 Malvidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.921     High  
cufflinks 2.622        
cufflinks 33.727     High High
cufflinks 2.941        
cufflinks 26.479     High  
cufflinks 2.716        

0 Strain