Protein Family : RNApolymerase sigma subunit 2 122046988

Method ID:  5273 Method Name:  Angiosperm
Sequence Alignment:  View MSA Member Count:  231

231 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29794.t000067 (1 of 1) PTHR30603//PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGC R. communis v0.1 3978   29794: 374390-378367
30078.t000100 (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC R. communis v0.1 3570   30078: 633727-637296
30148.t000011 (1 of 1) PF00140//PF04539//PF04542//PF04545 - Sigma-70 factor, region 1.2 (Sigma70_r1_2) // Sigma-70 region 3 (Sigma70_r3) // Sigma-70 region 2 (Sigma70_r2) // Sigma-70, region 4 (Sigma70_r4) R. communis v0.1 4863   30148: 70537-75399
Cucsa.362600 (1 of 1) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO C. sativus v1.0 4653   scaffold03611: 407567-412219
Cucsa.124610 (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC C. sativus v1.0 4969   scaffold01001: 488333-493301
Cucsa.160980 (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC C. sativus v1.0 2436   scaffold01144: 1051714-1054149
orange1.1g008352m.g (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC C. sinensis v1.1 4833   scaffold00283: 208308-213140
orange1.1g009449m.g (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC C. sinensis v1.1 3828   scaffold00005: 1310765-1314592
orange1.1g007404m.g (1 of 7) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO C. sinensis v1.1 4562   scaffold00238: 98595-103156
AT3G53920 (1 of 1) PTHR30603//PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGC A. thaliana TAIR10 SIGC 3081   Chr3: 19960869-19963949
AT1G08540 (1 of 6) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO A. thaliana TAIR10 SIG2 3510   Chr1: 2703336-2706845
AT2G36990 (1 of 6) PF04539 - Sigma-70 region 3 (Sigma70_r3) A. thaliana TAIR10 SIGF 2882   Chr2: 15537258-15540139
Thhalv10016472m.g (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC E. salsugineum v1.0 3120   scaffold_10: 8989105-8992224
Thhalv10010251m.g (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC E. salsugineum v1.0 2990   scaffold_16: 921494-924483
Thhalv10007187m.g (1 of 1) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO E. salsugineum v1.0 3279   scaffold_5: 12884535-12887813
Ciclev10011376m.g (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC C. clementina v1.0 5033   scaffold_6: 9681477-9686509
Ciclev10007968m.g (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC C. clementina v1.0 3811   scaffold_1: 3567764-3571574
Ciclev10030998m.g (1 of 7) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO C. clementina v1.0 4569   scaffold_4: 17143350-17147918
Lus10001339.g (1 of 2) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO L. usitatissimum v1.0 2713   scaffold2292: 76950-79662
Lus10013642.g (1 of 2) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO L. usitatissimum v1.0 2769   scaffold317: 226456-229224
Lus10020325.g (1 of 10) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO L. usitatissimum v1.0 2908   scaffold641: 404486-407393
Lus10005668.g (1 of 10) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO L. usitatissimum v1.0 2463   scaffold911: 57435-59897
Gorai.004G253700 (1 of 2) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO G. raimondii v2.1 4953   Chr04: 59086377-59091329
Gorai.009G415400 (1 of 2) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC G. raimondii v2.1 3539   Chr09: 63898063-63901601
Gorai.010G103500 (1 of 1) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC G. raimondii v2.1 5375   Chr10: 18789578-18794952
Gorai.006G165200 (1 of 2) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC G. raimondii v2.1 3321   Chr06: 42500097-42503417
Gorai.007G347300 (1 of 2) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO G. raimondii v2.1 4086   Chr07: 57758649-57762734
Thecc1EG022198 (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC T. cacao v1.1 3965   scaffold_5: 3106014-3109978
Thecc1EG025741 (1 of 1) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO // SUBFAMILY NOT NAMED T. cacao v1.1 4954   scaffold_5: 34392376-34397329
Migut.J00520 (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC M. guttatus v2.0 3440   scaffold_10: 2740769-2744208

231 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Cucsa.124610.1 C. sativus v1.0 122046988 RNApolymerase sigma subunit 2 3 5273 Angiosperm
Thhalv10016472m E. salsugineum v1.0 122046988 RNApolymerase sigma subunit 2 3 5273 Angiosperm
Thhalv10007187m E. salsugineum v1.0 122046988 RNApolymerase sigma subunit 2 3 5273 Angiosperm
Ciclev10007968m C. clementina v1.0 122046988 RNApolymerase sigma subunit 2 3 5273 Angiosperm
Lus10020325 L. usitatissimum v1.0 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
Lus10013642 L. usitatissimum v1.0 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
Gorai.004G253700.1 G. raimondii v2.1 122046988 RNApolymerase sigma subunit 2 5 5273 Angiosperm
Gorai.006G165200.1 G. raimondii v2.1 122046988 RNApolymerase sigma subunit 2 5 5273 Angiosperm
Thecc1EG025741t1 T. cacao v1.1 122046988 RNApolymerase sigma subunit 2 2 5273 Angiosperm
Cagra.4395s0044.1.p C. grandiflora v1.1 122046988 RNApolymerase sigma subunit 2 3 5273 Angiosperm
Migut.J00520.1.p M. guttatus v2.0 122046988 RNApolymerase sigma subunit 2 3 5273 Angiosperm
Migut.B01418.1.p M. guttatus v2.0 122046988 RNApolymerase sigma subunit 2 3 5273 Angiosperm
Glyma.04G002000.1.p G. max Wm82.a2.v1 122046988 RNApolymerase sigma subunit 2 7 5273 Angiosperm
Glyma.03G182600.1.p G. max Wm82.a2.v1 122046988 RNApolymerase sigma subunit 2 7 5273 Angiosperm
Glyma.06G001600.1.p G. max Wm82.a2.v1 122046988 RNApolymerase sigma subunit 2 7 5273 Angiosperm
Brara.D00505.1.p B. rapa FPsc v1.3 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
Brara.F00534.1.p B. rapa FPsc v1.3 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
Medtr3g118290.1 M. truncatula Mt4.0v1 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
Medtr1g063850.1 M. truncatula Mt4.0v1 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
Medtr1g007370.1 M. truncatula Mt4.0v1 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
SapurV1A.0890s0100.1.p S. purpurea v1.0 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
SapurV1A.1953s0020.1.p S. purpurea v1.0 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
SapurV1A.0671s0070.1.p S. purpurea v1.0 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
evm_27.model.AmTr_v1.0_scaffold00006.201 A. trichopoda v1.0 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
evm_27.model.AmTr_v1.0_scaffold00011.182 A. trichopoda v1.0 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
evm_27.model.AmTr_v1.0_scaffold00056.200 A. trichopoda v1.0 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
evm_27.model.AmTr_v1.0_scaffold00009.21 A. trichopoda v1.0 122046988 RNApolymerase sigma subunit 2 4 5273 Angiosperm
Traes_4DL_B8D22E4C2.1 T. aestivum v2.2 122046988 RNApolymerase sigma subunit 2 10 5273 Angiosperm
Traes_1AL_2F1278623.1 T. aestivum v2.2 122046988 RNApolymerase sigma subunit 2 10 5273 Angiosperm
Traes_4AL_26117D669.1 T. aestivum v2.2 122046988 RNApolymerase sigma subunit 2 10 5273 Angiosperm