Gene : Thecc1EG025741 T. cacao v1.1
Defline:  (1 of 1) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO // SUBFAMILY NOT NAMED Genomic Order:  2355
Name:  ? Thecc1EG025741 Secondary Identifier:  ? PAC:27423159
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG025741 0.5kb upstream 0.5kb upstream 5454 true scaffold_5: 34391876-34397329 Theobroma cacao
Thecc1EG025741 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 34391876-34392375 Theobroma cacao
Thecc1EG025741 0.5kb downstream 0.5kb downstream 5454 true scaffold_5: 34392376-34397829 Theobroma cacao
Thecc1EG025741 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 34397330-34397829 Theobroma cacao
Thecc1EG025741 1.0kb upstream 1.0kb upstream 5954 true scaffold_5: 34391376-34397329 Theobroma cacao
Thecc1EG025741 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 34391376-34392375 Theobroma cacao
Thecc1EG025741 1.0kb downstream 1.0kb downstream 5954 true scaffold_5: 34392376-34398329 Theobroma cacao
Thecc1EG025741 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 34397330-34398329 Theobroma cacao
Thecc1EG025741 2.0kb upstream 2.0kb upstream 6954 true scaffold_5: 34390376-34397329 Theobroma cacao
Thecc1EG025741 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 34390376-34392375 Theobroma cacao
Thecc1EG025741 2.0kb downstream 2.0kb downstream 6954 true scaffold_5: 34392376-34399329 Theobroma cacao
Thecc1EG025741 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 34397330-34399329 Theobroma cacao
Thecc1EG025741 5.0kb upstream 5.0kb upstream 9954 true scaffold_5: 34387376-34397329 Theobroma cacao
Thecc1EG025741 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 34387376-34392375 Theobroma cacao
Thecc1EG025741 5.0kb downstream 5.0kb downstream 9954 true scaffold_5: 34392376-34402329 Theobroma cacao
Thecc1EG025741 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 34397330-34402329 Theobroma cacao
Thecc1EG025741 10.0kb upstream 10.0kb upstream 14954 true scaffold_5: 34382376-34397329 Theobroma cacao
Thecc1EG025741 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 34382376-34392375 Theobroma cacao
Thecc1EG025741 10.0kb downstream 10.0kb downstream 14954 true scaffold_5: 34392376-34407329 Theobroma cacao
Thecc1EG025741 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 34397330-34407329 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827684 5264 Brassicales-Malvales View MSA
124338334 5266 SBM View MSA
124251670 5268 Malvidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain