Gene : SIGC A. thaliana TAIR10
Primary Identifier:  ? AT3G53920 Defline:  (1 of 1) PTHR30603//PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGC
Genomic Order:  4430 Name:  ? AT3G53920
Secondary Identifier:  ? PAC:19660843
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G53920 0.5kb upstream 0.5kb upstream 3581 true Chr3: 19960869-19964449 Arabidopsis thaliana
AT3G53920 0.5kb upstream 0.5kb upstream 500 false Chr3: 19963950-19964449 Arabidopsis thaliana
AT3G53920 0.5kb downstream 0.5kb downstream 3581 true Chr3: 19960369-19963949 Arabidopsis thaliana
AT3G53920 0.5kb downstream 0.5kb downstream 500 false Chr3: 19960369-19960868 Arabidopsis thaliana
AT3G53920 1.0kb upstream 1.0kb upstream 4081 true Chr3: 19960869-19964949 Arabidopsis thaliana
AT3G53920 1.0kb upstream 1.0kb upstream 1000 false Chr3: 19963950-19964949 Arabidopsis thaliana
AT3G53920 1.0kb downstream 1.0kb downstream 4081 true Chr3: 19959869-19963949 Arabidopsis thaliana
AT3G53920 1.0kb downstream 1.0kb downstream 1000 false Chr3: 19959869-19960868 Arabidopsis thaliana
AT3G53920 2.0kb upstream 2.0kb upstream 5081 true Chr3: 19960869-19965949 Arabidopsis thaliana
AT3G53920 2.0kb upstream 2.0kb upstream 2000 false Chr3: 19963950-19965949 Arabidopsis thaliana
AT3G53920 2.0kb downstream 2.0kb downstream 5081 true Chr3: 19958869-19963949 Arabidopsis thaliana
AT3G53920 2.0kb downstream 2.0kb downstream 2000 false Chr3: 19958869-19960868 Arabidopsis thaliana
AT3G53920 5.0kb upstream 5.0kb upstream 8081 true Chr3: 19960869-19968949 Arabidopsis thaliana
AT3G53920 5.0kb upstream 5.0kb upstream 5000 false Chr3: 19963950-19968949 Arabidopsis thaliana
AT3G53920 5.0kb downstream 5.0kb downstream 8081 true Chr3: 19955869-19963949 Arabidopsis thaliana
AT3G53920 5.0kb downstream 5.0kb downstream 5000 false Chr3: 19955869-19960868 Arabidopsis thaliana
AT3G53920 10.0kb upstream 10.0kb upstream 13081 true Chr3: 19960869-19973949 Arabidopsis thaliana
AT3G53920 10.0kb upstream 10.0kb upstream 10000 false Chr3: 19963950-19973949 Arabidopsis thaliana
AT3G53920 10.0kb downstream 10.0kb downstream 13081 true Chr3: 19950869-19963949 Arabidopsis thaliana
AT3G53920 10.0kb downstream 10.0kb downstream 10000 false Chr3: 19950869-19960868 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368214 5261 Brassicaceae View MSA
123835228 5264 Brassicales-Malvales View MSA
124339233 5266 SBM View MSA
124241002 5268 Malvidae View MSA
124066758 5270 Rosid View MSA
123740141 5271 Pentapetalae View MSA
122790910 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.783        
cufflinks 4.581        
cufflinks 19.278        
cufflinks 4.614        
cufflinks 16.272        
cufflinks 3.349       Low

0 Strain